View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12383_low_3 (Length: 306)
Name: NF12383_low_3
Description: NF12383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12383_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 3087095 - 3086806
Alignment:
| Q |
13 |
agcagagacatgataatgatataatgaagtcatgtgaaacactgttgtcaattagttgttgagtaaaaggaaacaaaatttgagttctttgcttatggta |
112 |
Q |
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| T |
3087095 |
agcaaagacatgataatgatataatgaagtcatgtgaaacactgttgtcaattagttgttgagtaaaaggaaacaaaatttgagttctttgcttatggta |
3086996 |
T |
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| Q |
113 |
cactgttacctatacatgcaaatgcaacttggaagcaacatatttgtggtctcaaggtcacgatttccacgactaggtgatgcaattgtagttga-aaaa |
211 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3086995 |
cactgttacctatacatgcaaatgcaacttgcaagcaacatgtttgtggtctccaggtcacgatttccacgactaggtgatgcaattgtagttgaaaaaa |
3086896 |
T |
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| Q |
212 |
tggctggtattaggagcattagtttttgcttcttagaccacacttgcttaaattgggcaacacataaaagaaatgagcacaggttctgct |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3086895 |
tggctggtattaggagcattagtttttgcttcttagaccacacttgcttaaattgggcaacacataaaagaaatgagcacaggttatgct |
3086806 |
T |
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