View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12384_low_1 (Length: 408)
Name: NF12384_low_1
Description: NF12384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12384_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 7552255 - 7551868
Alignment:
| Q |
1 |
cacatctttaacttgtggtctctgtacctctgtagcatctgggatctcacaaaaatcagctagaatcggttactgttttctctttggtgcgtctcttata |
100 |
Q |
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| T |
7552255 |
cacatctttaacttgtggtctctgtacctctgtagcatctgggatctcacaaaaatcagctagaatcggttactgttttctctttggtgcgtctcttata |
7552156 |
T |
|
| Q |
101 |
gtttcttggattcttagagaagttggagcaccccttttggagaaaattccatgtaagtttatttctttagctaaagagttcaacttttttactaattttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7552155 |
gtttcttggattcttagagaagttggagcaccccttttggagaaaattccatgtaagtttatttctttagctaaagatttcaacttttttactaattttt |
7552056 |
T |
|
| Q |
201 |
catttgggtatgtgtgttaatgattggttaagtttgataaattgggtttgcttttgtttcatcttcatagtcaatggtttttcagaaattcgatgcttag |
300 |
Q |
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| T |
7552055 |
catttgggtatgtgtgttaatgattggttaagtttgataaattgggtttgcttttgtttcatcttcatagtcaatggtttttcagaaattcgatgcttag |
7551956 |
T |
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| Q |
301 |
aattgtgttggttgaattcgatgtccgacacatgattgataagctgacattgacgcatgtgattacattgaattatgccattgttcaa |
388 |
Q |
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| T |
7551955 |
aattgtgttggttgaattcgatgtccgacacgtgattgataagctgacattgacgcatgtgattacattgaattctgccattgttcaa |
7551868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 29198479 - 29198516
Alignment:
| Q |
345 |
tgacattgacgcatgtgattacattgaattatgccatt |
382 |
Q |
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| T |
29198479 |
tgacattgacgcatatgattacattgaattatgtcatt |
29198516 |
T |
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