View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12384_low_2 (Length: 304)
Name: NF12384_low_2
Description: NF12384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12384_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 43755356 - 43755087
Alignment:
| Q |
18 |
ttaagaagttaagaaagtttgattatgtaagttgaataattgtttttggcataggaatgaaatgaatcattgaaaagagtgaaagaaagaagaacctttt |
117 |
Q |
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| T |
43755356 |
ttaagaagttaagaaagtttgattatgtaagttgaataattgtttttggcataggaattaaatgaatcattgaaaagagtgaaagaaagaagaacctttt |
43755257 |
T |
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| Q |
118 |
gggagtcattgggttgactttggaactgaaggttgcagctccgaactacgaatttggttcgaagggaaattgttgaagaaagacgaggaagagtggtggt |
217 |
Q |
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| T |
43755256 |
gggagtcattgggttgactttggaactgaaggttgcagctccgaactacgaatttggttcgaagggaaattgttgaagaaagacgaggaagagtggtggt |
43755157 |
T |
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| Q |
218 |
tggtttgacacgaaacaacgccattcagttcaatgtctcctcctctcaccttctgttttcttccaactct |
287 |
Q |
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| T |
43755156 |
tggtttgacacgaaacaacgccattcagttcaatgtctcctcctctcaccttctgttttcttccaactct |
43755087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 43759953 - 43759825
Alignment:
| Q |
91 |
aaagagtgaaagaaagaagaaccttttgggagtcattgggttgactttggaactgaaggttgca---gctccgaactacgaatttggttcgaagggaaat |
187 |
Q |
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| T |
43759953 |
aaagagtgaaagaaggaggaaccttgcgtgagtcattgggctgcatttggagttgaaggttagaagagcttcgaaccacaaatttggttccaagggaaag |
43759854 |
T |
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| Q |
188 |
tgttgaagaaagacgaggaagagtggtgg |
216 |
Q |
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| T |
43759853 |
tgatgaagcaaggcgaggaagagtggtgg |
43759825 |
T |
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