View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12385_high_10 (Length: 244)

Name: NF12385_high_10
Description: NF12385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12385_high_10
NF12385_high_10
[»] chr3 (10 HSPs)
chr3 (1-227)||(10877529-10877755)
chr3 (151-218)||(53590018-53590085)
chr3 (129-215)||(43445505-43445591)
chr3 (129-216)||(7320177-7320263)
chr3 (83-129)||(53590463-53590509)
chr3 (83-127)||(43445133-43445177)
chr3 (132-227)||(50426013-50426108)
chr3 (157-227)||(17508781-17508851)
chr3 (83-116)||(7321199-7321232)
chr3 (170-218)||(51160944-51160992)
[»] chr2 (8 HSPs)
chr2 (129-227)||(44440461-44440559)
chr2 (129-211)||(45036059-45036141)
chr2 (129-227)||(8271112-8271212)
chr2 (129-220)||(6571026-6571117)
chr2 (83-128)||(4653350-4653395)
chr2 (129-227)||(4653720-4653818)
chr2 (156-220)||(22540123-22540187)
chr2 (179-211)||(45041761-45041793)
[»] chr8 (11 HSPs)
chr8 (129-227)||(12607975-12608073)
chr8 (129-227)||(15243518-15243616)
chr8 (129-219)||(1758614-1758704)
chr8 (132-227)||(12563321-12563415)
chr8 (156-227)||(12597097-12597168)
chr8 (129-219)||(28932223-28932313)
chr8 (129-219)||(36128147-36128233)
chr8 (83-128)||(15243150-15243195)
chr8 (83-128)||(23589609-23589654)
chr8 (83-127)||(1759019-1759063)
chr8 (83-127)||(12562951-12562995)
[»] chr1 (7 HSPs)
chr1 (123-219)||(39997499-39997595)
chr1 (129-227)||(16824094-16824192)
chr1 (129-215)||(8266791-8266877)
chr1 (129-227)||(11075885-11075983)
chr1 (157-219)||(18565921-18565983)
chr1 (129-218)||(3620880-3620969)
chr1 (83-126)||(2887224-2887267)
[»] scaffold0013 (1 HSPs)
scaffold0013 (129-227)||(54751-54849)
[»] chr4 (12 HSPs)
chr4 (129-227)||(41940539-41940635)
chr4 (129-219)||(11371634-11371723)
chr4 (130-227)||(50945993-50946090)
chr4 (129-209)||(25969778-25969858)
chr4 (126-215)||(54259406-54259495)
chr4 (133-225)||(40656138-40656230)
chr4 (83-129)||(47924683-47924729)
chr4 (129-218)||(6450497-6450586)
chr4 (129-226)||(27184758-27184855)
chr4 (161-225)||(23397572-23397636)
chr4 (83-124)||(41940954-41940995)
chr4 (129-225)||(47924264-47924360)
[»] chr7 (9 HSPs)
chr7 (129-218)||(12501706-12501795)
chr7 (129-218)||(12527340-12527429)
chr7 (129-227)||(5464550-5464648)
chr7 (129-227)||(27046143-27046241)
chr7 (130-227)||(10328958-10329055)
chr7 (151-227)||(5949559-5949635)
chr7 (169-219)||(31443626-31443676)
chr7 (83-123)||(12501645-12501685)
chr7 (83-123)||(12527279-12527319)
[»] chr6 (2 HSPs)
chr6 (129-226)||(2443355-2443452)
chr6 (129-227)||(29047284-29047381)
[»] chr5 (1 HSPs)
chr5 (163-219)||(1362525-1362581)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 10877529 - 10877755
Alignment:
Q  1 attctaatttcgattgattttgttgtttcacacttcgtaattttgaaatattttaattagacctacaattttagattcttctatgcatttcttactatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10877529 attctaatttcgattgattttgttgtttcacacttcgtaattttgaaatattttaattagacctacaattttagattcttctatgcatttcttactatct 10877628  T
Q  101 caatcttggtttggactcacactcatcgtattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgc 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10877629 caatcttggtttggactcacactcatcatattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgc 10877728  T
Q  201 agattttatggctaaggaagtatcaca 227  Q
    |||||||||||||||||||||||||||    
T  10877729 agattttatggctaaggaagtatcaca 10877755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 53590085 - 53590018
Alignment:
Q  151 aatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaagga 218  Q
    |||||||||||||||||| |||||||  | |||||||| || ||||||||||||||||||||||||||    
T  53590085 aatgaaaatacaacattggtgcatgttttaagggaacaaaatatgtgtgcagattttatggctaagga 53590018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 43445505 - 43445591
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaa 215  Q
    ||||| ||||| ||||||||| ||| |||||||||| |||||||  || ||||||||||| || |||||| ||||||||||||||||    
T  43445505 tattatagatgatttacatagaaataaaaatacaacgttgatgcccgttcttagggaacaaaatatgtgttcagattttatggctaa 43445591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 7320263 - 7320177
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaag 216  Q
    |||||||| |||||||||| | |||| |||||||| |||| ||||||  |||||| |||| || ||||||||||||||||||||||||    
T  7320263 tattagagttgctttacatggaaatggaaatacaatattggtgcatgctcttagg-aacaaaatatgtgtgcagattttatggctaag 7320177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 53590509 - 53590463
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggactcacactcatcgt 129  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||||    
T  53590509 atgcatttcttactatctgaatcttagtttggactcatactcatcgt 53590463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 43445133 - 43445177
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggactcacactcatc 127  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||    
T  43445133 atgcatttcttactatcccaattttggtttggacccacactcatc 43445177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 50426013 - 50426108
Alignment:
Q  132 tagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    |||||||| ||||||  | |||||||||||||||||  ||||| |  ||| |||||| || |||| |||| |||||||||| ||||||| ||||||    
T  50426013 tagagatgatttacacggaaatgaaaatacaacatttgtgcatatttttaaggaacaaaatatgtatgcatattttatggccaaggaaggatcaca 50426108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 17508781 - 17508851
Alignment:
Q  157 aatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    |||||||||||| ||||||| ||||||||||| || |||| |||| ||||||| | | |||||| ||||||    
T  17508781 aatacaacattggtgcatgttcttagggaacaaaatatgtttgcatattttatagtttaggaaggatcaca 17508851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 7321199 - 7321232
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggac 116  Q
    |||||||| |||||||||||||||||||||||||    
T  7321199 atgcattttttactatctcaatcttggtttggac 7321232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 51160944 - 51160992
Alignment:
Q  170 tgcatgtacttagggaacataacatgtgtgcagattttatggctaagga 218  Q
    ||||||| |||||  |||| |||||||||||| ||||||||||||||||    
T  51160944 tgcatgttcttagaaaacaaaacatgtgtgcaaattttatggctaagga 51160992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 44440461 - 44440559
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    ||||||||||| |||||||   |||||||||||||||||| ||||||| ||||||||||| || ||||||||||||||||||| |||||||| ||||||    
T  44440461 tattagagatgttttacatgaaaatgaaaatacaacattggtgcatgttcttagggaacaaaatatgtgtgcagattttatggttaaggaaggatcaca 44440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 45036141 - 45036059
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatgg 211  Q
    ||||||||||| |||||||   |||||||||||||||||  ||||||| ||||||||||| |||||||||||| |||||||||    
T  45036141 tattagagatgttttacatgaaaatgaaaatacaacattagtgcatgttcttagggaacaaaacatgtgtgcaaattttatgg 45036059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 8271212 - 8271112
Alignment:
Q  129 tattagagatgctttacataggaatgaaaataca--acattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcac 226  Q
    |||||||||||||||||||   |||| |||||||  ||| || | ||||| ||||||||||| || |||| ||||||||||||||||||||||| |||||    
T  8271212 tattagagatgctttacatgaaaatggaaatacacaacagtggttcatgttcttagggaacaaaatatgtatgcagattttatggctaaggaagaatcac 8271113  T
Q  227 a 227  Q
    |    
T  8271112 a 8271112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 6571117 - 6571026
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaag 220  Q
    ||||||||||||||| ||| | |||  |||||||| |||  | ||||| ||||||||||| || | |||||||||||||||| |||||||||    
T  6571117 tattagagatgctttgcatggaaatagaaatacaatattagtacatgttcttagggaacaaaatacgtgtgcagattttatgactaaggaag 6571026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 4653350 - 4653395
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggactcacactcatcg 128  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||    
T  4653350 atgcatttcttactatcccaatcatggtttggacccacactcatcg 4653395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 4653720 - 4653818
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    ||||| ||||||| ||||| | |||| |||||| | |||| | ||||| || |  ||||| || ||||||||| |||||||||||||||||| ||||||    
T  4653720 tattaaagatgctctacatggaaatggaaatactatattggtacatgttctcatagaacaaaatatgtgtgcaaattttatggctaaggaaggatcaca 4653818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 22540123 - 22540187
Alignment:
Q  156 aaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaag 220  Q
    ||||||||||||| ||||||| ||  | ||||| || || ||||||||||||||| |||||||||    
T  22540123 aaatacaacattggtgcatgttctcggagaacaaaatatatgtgcagattttatgactaaggaag 22540187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 45041793 - 45041761
Alignment:
Q  179 ttagggaacataacatgtgtgcagattttatgg 211  Q
    |||||||||| ||||||||||||||||||||||    
T  45041793 ttagggaacaaaacatgtgtgcagattttatgg 45041761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 12607975 - 12608073
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    ||||||||||| ||||||| | |||| ||||||||||||| ||||||| | || |||||| || |||||||||||||||||||||||||||| ||||||    
T  12607975 tattagagatggtttacatggaaatggaaatacaacattggtgcatgttcataaggaacaaaatatgtgtgcagattttatggctaaggaaggatcaca 12608073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 15243518 - 15243616
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    ||||||||||| |||||||   |||||||| ||||||||| ||||||| |||||||||||  ||||||||||| |||||||||||||||||| ||||||    
T  15243518 tattagagatgttttacatgaaaatgaaaaaacaacattggtgcatgttcttagggaacaatacatgtgtgcatattttatggctaaggaaggatcaca 15243616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 1758704 - 1758614
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 219  Q
    ||||||||||| |||||||   |||| ||||||||||||||||||||| ||||||| ||| || || ||||||||||||||||||||||||    
T  1758704 tattagagatgatttacatgaaaatggaaatacaacattgatgcatgttcttaggggacaaaatatatgtgcagattttatggctaaggaa 1758614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 12563321 - 12563415
Alignment:
Q  132 tagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    ||||||| |||||||| | |||||||||||||||||| |||||||  ||| |||| | || ||||||||||||||||||| |||||||| ||||||    
T  12563321 tagagattctttacatggaaatgaaaatacaacattggtgcatgttttta-ggaaaaaaatatgtgtgcagattttatggttaaggaaggatcaca 12563415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 12597097 - 12597168
Alignment:
Q  156 aaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    ||||| ||| ||| ||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||    
T  12597097 aaatataactttggtgcatgttcttagggaacaaaatatgtgtgcagattttatggctaaggaaggatcaca 12597168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 28932313 - 28932223
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 219  Q
    ||||| ||||||| ||||| | | || ||||||||||||| ||||||| ||||| ||||| || ||||||| |||||||||||||||||||    
T  28932313 tattaaagatgctctacatggaagtggaaatacaacattggtgcatgttcttagagaacaaaatatgtgtgtagattttatggctaaggaa 28932223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 36128147 - 36128233
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 219  Q
    |||||||||| || ||||||  |||||||||| ||||||| |||||||     ||||||| || ||||||||| |||||||||||||||||    
T  36128147 tattagagatcctatacataaaaatgaaaatataacattggtgcatgtt----gggaacaaaatatgtgtgcaaattttatggctaaggaa 36128233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 15243150 - 15243195
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggactcacactcatcg 128  Q
    |||||| |||||||||| ||||| |||||||||| |||||||||||    
T  15243150 atgcatctcttactatcccaatcctggtttggacccacactcatcg 15243195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 23589609 - 23589654
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggactcacactcatcg 128  Q
    ||||||||||||| ||| ||||| |||||||||| |||||||||||    
T  23589609 atgcatttcttaccatcccaatcctggtttggacccacactcatcg 23589654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 1759063 - 1759019
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggactcacactcatc 127  Q
    ||||||||||||||||  |||||||||||||||| || |||||||    
T  1759063 atgcatttcttactattccaatcttggtttggacccatactcatc 1759019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 12562951 - 12562995
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggactcacactcatc 127  Q
    |||||||||||| |||| ||||||| |||||||| ||||||||||    
T  12562951 atgcatttcttattatcccaatcttcgtttggacccacactcatc 12562995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 39997595 - 39997499
Alignment:
Q  123 tcatcgtattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 219  Q
    ||||| ||||||||||||||| ||| |||||  ||| ||||||||||||||||| |||||||| || || ||||||||| |||||||||||||||||    
T  39997595 tcatcatattagagatgctttccatgggaatagaaacacaacattgatgcatgttcttagggagcaaaatatgtgtgcaaattttatggctaaggaa 39997499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 16824192 - 16824094
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    |||||||||||||||||||   ||||||||||||||||||  |||||| ||||||||||| || |||||| || |||||||||||||| ||| ||||||    
T  16824192 tattagagatgctttacatgaaaatgaaaatacaacattggcgcatgttcttagggaacaaaatatgtgtacaaattttatggctaagaaaggatcaca 16824094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 8266791 - 8266877
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaa 215  Q
    ||||| ||||| ||||||| | ||||  |||||||||||| ||||||| ||||||||||| || |  ||||||||||||||||||||    
T  8266791 tattaaagatgttttacatggaaatggtaatacaacattggtgcatgttcttagggaacaaaatacttgtgcagattttatggctaa 8266877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 11075885 - 11075983
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    ||||| |||||||||||||   |||| ||||||||||||| ||||||| | ||  ||||| || ||||||| || ||||||||||||||||| ||||||    
T  11075885 tattaaagatgctttacatgaaaatggaaatacaacattggtgcatgttcctaacgaacaaaatatgtgtgtaggttttatggctaaggaagaatcaca 11075983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 18565921 - 18565983
Alignment:
Q  157 aatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 219  Q
    |||||||||||| ||||||| ||||||||||| ||||| |||| ||||||||||| |||||||    
T  18565921 aatacaacattggtgcatgttcttagggaacaaaacatatgtgtagattttatggttaaggaa 18565983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 3620969 - 3620880
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaagga 218  Q
    ||||||||||  ||||||| | ||||| || || |||||  ||||||| ||||| ||||| ||||||||| || ||||||||||||||||    
T  3620969 tattagagatattttacatggaaatgataacactacattagtgcatgttcttagagaacaaaacatgtgtacaaattttatggctaagga 3620880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 2887224 - 2887267
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggactcacactcat 126  Q
    |||||||| |||||||| |||||||||||||||| |||||||||    
T  2887224 atgcattttttactatcccaatcttggtttggacccacactcat 2887267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 54849 - 54751
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    ||||||||||| ||||||| | ||||  |||||||||||| |||||||  |||||||||| || ||||||||||| |||||||||||||||| ||||||    
T  54849 tattagagatgttttacatggaaatggtaatacaacattgttgcatgtttttagggaacaaaatatgtgtgcagactttatggctaaggaagaatcaca 54751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 41940635 - 41940539
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    ||||||||||| ||||||| | ||||  |||||||||||||||||||| ||||||||||  || || |||||| |||||||||||||||||| ||||||    
T  41940635 tattagagatgttttacatggaaatggtaatacaacattgatgcatgttcttagggaac--aaaatatgtgcaaattttatggctaaggaaggatcaca 41940539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 11371634 - 11371723
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 219  Q
    ||||||||||  ||||||| | |||| ||||||||||||| ||||||| |||||| |||| || |||||||||||||||||||||||||||    
T  11371634 tattagagattatttacatggaaatggaaatacaacattggtgcatgttcttagg-aacaaaatatgtgtgcagattttatggctaaggaa 11371723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 50945993 - 50946090
Alignment:
Q  130 attagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    |||||||||| |||||||   ||||||||||||||||||||||||||  |||| ||||| || ||| ||| ||||||||| |||||||||| ||||||    
T  50945993 attagagatgttttacatgaaaatgaaaatacaacattgatgcatgtttttagagaacaaaatatgcgtgtagattttattgctaaggaaggatcaca 50946090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 25969778 - 25969858
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttat 209  Q
    ||||||||||| ||||||| | |||||||||||||||||| ||||||| |||| |||||| || ||||||||| |||||||    
T  25969778 tattagagatgttttacatggaaatgaaaatacaacattggtgcatgttcttaaggaacaaaatatgtgtgcatattttat 25969858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 54259406 - 54259495
Alignment:
Q  126 tcgtattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaa 215  Q
    ||||| |||||||| ||||||| | |||| |||||||||||||  |||||| ||||||||||| || ||||||||| |||| ||||||||    
T  54259406 tcgtaatagagatgatttacatggaaatggaaatacaacattggagcatgttcttagggaacaaaatatgtgtgcaaatttcatggctaa 54259495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 40656230 - 40656138
Alignment:
Q  133 agagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatca 225  Q
    ||||||| ||||||| | |||| |||||| |||||| ||||||| || || ||||| || |||||||||||||||||| ||||||||| ||||    
T  40656230 agagatgttttacatggaaatggaaatacgacattggtgcatgttctaagagaacaaaatatgtgtgcagattttatgactaaggaagaatca 40656138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 47924729 - 47924683
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggactcacactcatcgt 129  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  47924729 atgcatttcttactatcccaatcttggtttggacccacactcatcgt 47924683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 6450497 - 6450586
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaagga 218  Q
    ||||||||||| |||||||   |||| |||||||||| || | ||||| ||||||||||| || ||||||| ||||||||||| ||||||    
T  6450497 tattagagatgatttacatgaaaatggaaatacaacagtggttcatgttcttagggaacaaaatatgtgtgtagattttatggttaagga 6450586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 27184855 - 27184758
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcac 226  Q
    ||||||||||| |||||||   ||||  ||||||||||| |||||||| | ||||||||| || |||| || | |||||||||||||||||| |||||    
T  27184855 tattagagatgttttacatgaaaatggtaatacaacattaatgcatgttcatagggaacaaaatatgtatgtatattttatggctaaggaaggatcac 27184758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 23397636 - 23397572
Alignment:
Q  161 caacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatca 225  Q
    |||||||| ||||||| ||||||||||| ||||| |||||| ||||||||||||| |||| ||||    
T  23397636 caacattggtgcatgttcttagggaacaaaacatatgtgcaaattttatggctaatgaagaatca 23397572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 41940995 - 41940954
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggactcacactc 124  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  41940995 atgcatttcttactatcccaatcttggtttggacccacactc 41940954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 47924360 - 47924264
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatca 225  Q
    |||| |||||| |||||||   |||| ||||| ||||||| ||||| | || || ||||| ||||||||||| ||||||||||||||| ||| ||||    
T  47924360 tattcgagatgttttacatgaaaatggaaatataacattggtgcatattctcagcgaacaaaacatgtgtgctgattttatggctaagtaaggatca 47924264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 12501706 - 12501795
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaagga 218  Q
    ||||||||| | |||||||   |||| ||||||||||||| ||||||| ||||||  ||| |||||||||||||||||||||||||||||    
T  12501706 tattagagacgttttacatgaaaatggaaatacaacattggtgcatgttcttaggttacaaaacatgtgtgcagattttatggctaagga 12501795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 12527340 - 12527429
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaagga 218  Q
    ||||||||| | |||||||   |||| ||||||||||||| ||||||| ||||||  ||| |||||||||||||||||||||||||||||    
T  12527340 tattagagacgttttacatgaaaatggaaatacaacattggtgcatgttcttaggttacaaaacatgtgtgcagattttatggctaagga 12527429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 5464648 - 5464550
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    ||||||||||| ||||||| | |||| ||||| ||||||| ||||| | ||| ||||||| || |  ||||||||||||||||||||||||| ||||||    
T  5464648 tattagagatgttttacatggaaatggaaatagaacattggtgcatattcttggggaacaaaatacatgtgcagattttatggctaaggaaggatcaca 5464550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 27046241 - 27046143
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    ||||||||||| ||||||| | |||||||||||||||||| ||||||| |||| |||||| || | ||| ||| ||||| || ||||||||| ||||||    
T  27046241 tattagagatgttttacatggaaatgaaaatacaacattggtgcatgttcttatggaacaaaatacgtgggcaaattttgtgactaaggaaggatcaca 27046143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 10329055 - 10328958
Alignment:
Q  130 attagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    |||||||||||||||||| | ||||  || ||||||||| ||||||| ||||||||||| || ||||||||| ||||||| |  ||||||| ||||||    
T  10329055 attagagatgctttacatggaaatgggaacacaacattggtgcatgttcttagggaacaaaatatgtgtgcaaattttatagtgaaggaaggatcaca 10328958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 5949635 - 5949559
Alignment:
Q  151 aatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    |||| ||||||||||||| ||||||| ||||||||||| ||||||||||  ||||||| ||||||| ||| ||||||    
T  5949635 aatggaaatacaacattggtgcatgttcttagggaacaaaacatgtgtgttgattttacggctaagaaaggatcaca 5949559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 31443626 - 31443676
Alignment:
Q  169 atgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 219  Q
    |||||||| ||||||||| | || ||||||| |||||||||||||||||||    
T  31443626 atgcatgttcttagggaataaaatatgtgtgtagattttatggctaaggaa 31443676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 12501645 - 12501685
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggactcacact 123  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  12501645 atgcatttcttactatcccaatcctggtttggacccacact 12501685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 12527279 - 12527319
Alignment:
Q  83 atgcatttcttactatctcaatcttggtttggactcacact 123  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  12527279 atgcatttcttactatcccaatcctggtttggacccacact 12527319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 2443355 - 2443452
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcac 226  Q
    ||||||||||| |||||||   ||||  ||||||||||| |||||||| | ||||||||| || |||| || | |||||||||||||||||| |||||    
T  2443355 tattagagatgttttacatgaaaatggtaatacaacattaatgcatgttcatagggaacaaaatatgtatgtatattttatggctaaggaaggatcac 2443452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 29047284 - 29047381
Alignment:
Q  129 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcaca 227  Q
    ||||||||||||||||||| | ||||  |||| ||||||  | ||| | ||||||||||| || |||||||||||||||||||||| | ||| ||||||    
T  29047284 tattagagatgctttacatggaaatggtaataaaacattagtacattt-cttagggaacaaaatatgtgtgcagattttatggctatgtaaggatcaca 29047381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 1362525 - 1362581
Alignment:
Q  163 acattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 219  Q
    |||||||| ||||| ||||| ||||| || |||| || |||||||||||||||||||    
T  1362525 acattgatacatgttcttagtgaacaaaatatgtatgtagattttatggctaaggaa 1362581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University