View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12385_high_4 (Length: 428)

Name: NF12385_high_4
Description: NF12385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12385_high_4
NF12385_high_4
[»] chr4 (10 HSPs)
chr4 (158-327)||(54640984-54641153)
chr4 (158-301)||(54642379-54642522)
chr4 (13-141)||(54640870-54640998)
chr4 (91-141)||(54642343-54642393)
chr4 (205-259)||(22072494-22072549)
chr4 (13-86)||(1441965-1442037)
chr4 (34-87)||(7423287-7423340)
chr4 (35-83)||(13253323-13253371)
chr4 (203-232)||(45638744-45638773)
chr4 (48-88)||(54640641-54640681)
[»] chr1 (6 HSPs)
chr1 (205-301)||(16890177-16890273)
chr1 (245-301)||(34996546-34996602)
chr1 (205-259)||(17826244-17826299)
chr1 (91-140)||(37102252-37102301)
chr1 (158-199)||(16890111-16890152)
chr1 (205-249)||(30038143-30038187)
[»] chr8 (7 HSPs)
chr8 (205-299)||(21661114-21661209)
chr8 (205-263)||(5176631-5176689)
chr8 (169-219)||(5176563-5176614)
chr8 (207-264)||(20998684-20998742)
chr8 (207-264)||(21012621-21012679)
chr8 (48-88)||(21665757-21665797)
chr8 (25-85)||(24398711-24398771)
[»] chr3 (8 HSPs)
chr3 (205-282)||(8638906-8638983)
chr3 (177-249)||(41712267-41712340)
chr3 (205-263)||(8728609-8728668)
chr3 (205-263)||(9080496-9080555)
chr3 (34-88)||(5404619-5404673)
chr3 (205-263)||(42510600-42510657)
chr3 (205-239)||(54994703-54994737)
chr3 (48-88)||(46288437-46288477)
[»] chr7 (1 HSPs)
chr7 (169-301)||(6515445-6515580)
[»] chr6 (1 HSPs)
chr6 (205-239)||(21395676-21395710)
[»] chr5 (2 HSPs)
chr5 (205-239)||(29526123-29526157)
chr5 (205-249)||(37473585-37473629)
[»] chr2 (2 HSPs)
chr2 (206-240)||(13218776-13218810)
chr2 (27-88)||(846361-846422)
[»] scaffold0063 (1 HSPs)
scaffold0063 (205-234)||(33901-33930)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 158 - 327
Target Start/End: Original strand, 54640984 - 54641153
Alignment:
Q  158 aaataacatactttattaataatagaatatgattgcacaataggttcccaagaattcgagagcttggtctctcccaaccaataaccagtccccaataaaa 257  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54640984 aaataacttactttattaataatagaatatgattgcacaataggttcccaagaattcgagagcttggtctctcccaaccaataaccagtccccaataaaa 54641083  T
Q  258 tgcctatcgacattgtccttcagatcccttatttatccagtaaccagtccccaagtatttcccctgttcc 327  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54641084 tgcctatcgacattgtccttcagatcccttatttatccagcaaccagtccccaagtatttcccctgttcc 54641153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 158 - 301
Target Start/End: Original strand, 54642379 - 54642522
Alignment:
Q  158 aaataacatactttattaataatagaatatgattgcacaataggttcccaagaattcgagagcttggtctctcccaaccaataaccagtccccaataaaa 257  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  54642379 aaataacttactttattaataatagaatatgattacacaataggttcccaagaattcgagaggttggtctctcccaaccaataaccagtccccaataaaa 54642478  T
Q  258 tgcctatcgacattgtccttcagatcccttatttatccagtaac 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  54642479 tgcctatcgacattgtccttcagatcccttatttatccagtaac 54642522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 54640870 - 54640998
Alignment:
Q  13 gtgctatgataaggatttggatattatgtggtgcgcaagtcccacattgagtattatgggatgctcggtggagtatattgatagaaaccggtaccaaaca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54640870 gtgctatgataaggatttggatattatgtggtgcgcaagtcccacattgagtattatgggatgctcggtggagtatattgatagaaaccggtaccaaaca 54640969  T
Q  113 tagaacaggaaaagaaataacttacttta 141  Q
    |||||||||||||||||||||||||||||    
T  54640970 tagaacaggaaaagaaataacttacttta 54640998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 54642343 - 54642393
Alignment:
Q  91 tgatagaaaccggtaccaaacatagaacaggaaaagaaataacttacttta 141  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  54642343 tgatagaaaccggtaccaaacatagaaaaggaatagaaataacttacttta 54642393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 22072549 - 22072494
Alignment:
Q  205 ccaagaattcgagagcttggtctctccc-aaccaataaccagtccccaataaaatg 259  Q
    ||||||||||||||| |||||||||||| |||||||| |||||||| |||||||||    
T  22072549 ccaagaattcgagagtttggtctctcccaaaccaatatccagtcccaaataaaatg 22072494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 1442037 - 1441965
Alignment:
Q  13 gtgctatgataaggatttggatattatgtggtgcgcaagtcccacattgagtattatgggatgctcggtggagt 86  Q
    ||||||||||| ||| |||| ||||||| ||||| ||||||||| || ||| | ||||||||||||||||||||    
T  1442037 gtgctatgatagggacttgggtattatgaggtgcccaagtcccatatcgag-agtatgggatgctcggtggagt 1441965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 7423287 - 7423340
Alignment:
Q  34 tattatgtggtgcgcaagtcccacattgagtattatgggatgctcggtggagta 87  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||| |||| ||||    
T  7423287 tattatgaggtgcgcaagtcccacatcgagtagtatgggatgcttggtgaagta 7423340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 13253323 - 13253371
Alignment:
Q  35 attatgtggtgcgcaagtcccacattgagtattatgggatgctcggtgg 83  Q
    |||||| ||||| |||||||||||||||| | |||||||||||||||||    
T  13253323 attatgaggtgcccaagtcccacattgagcagtatgggatgctcggtgg 13253371  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 232
Target Start/End: Original strand, 45638744 - 45638773
Alignment:
Q  203 tcccaagaattcgagagcttggtctctccc 232  Q
    ||||||||||||||||||||||||||||||    
T  45638744 tcccaagaattcgagagcttggtctctccc 45638773  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 54640641 - 54640681
Alignment:
Q  48 caagtcccacattgagtattatgggatgctcggtggagtat 88  Q
    |||||||||||||||||||||||||||| ||  ||||||||    
T  54640641 caagtcccacattgagtattatgggatgatcaatggagtat 54640681  T

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Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 16890177 - 16890273
Alignment:
Q  205 ccaagaattcgagagcttggtctctcccaaccaataaccagtccccaataaaatgcctatcgacattgtccttcagatcccttatttatccagtaac 301  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16890177 ccaagaattcgggagcttggtcactcccaaccagtaaccagtccccaataaaatgcctatcgacattgtccttaagatcccttatttatccagtaac 16890273  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 34996602 - 34996546
Alignment:
Q  245 gtccccaataaaatgcctatcgacattgtccttcagatcccttatttatccagtaac 301  Q
    |||||||||||||||||||  ||||||||||||||||| || |||||||| ||||||    
T  34996602 gtccccaataaaatgcctactgacattgtccttcagattccctatttatctagtaac 34996546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 17826244 - 17826299
Alignment:
Q  205 ccaagaattcgagagcttggtctctccc-aaccaataaccagtccccaataaaatg 259  Q
    |||||||||||||||||||||||||||| |||||||| |||||| | |||||||||    
T  17826244 ccaagaattcgagagcttggtctctcccaaaccaatatccagtctcaaataaaatg 17826299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 37102252 - 37102301
Alignment:
Q  91 tgatagaaaccggtaccaaacatagaacaggaaaagaaataacttacttt 140  Q
    |||||||||||||||||||||||||||  | || ||||||||||||||||    
T  37102252 tgatagaaaccggtaccaaacatagaaatgtaatagaaataacttacttt 37102301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 16890111 - 16890152
Alignment:
Q  158 aaataacatactttattaataatagaatatgattgcacaata 199  Q
    ||||||| || ||||||||||||||||||||||| |||||||    
T  16890111 aaataacttattttattaataatagaatatgattacacaata 16890152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 30038143 - 30038187
Alignment:
Q  205 ccaagaattcgagagcttggtctctcccaaccaataaccagtccc 249  Q
    |||||||||| |||| |||||||||||||| |||||| |||||||    
T  30038143 ccaagaattcaagagtttggtctctcccaatcaataatcagtccc 30038187  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 21661209 - 21661114
Alignment:
Q  205 ccaagaattcgagagcttggtctctcccaaccaataaccagtcccc-aataaaatgcctatcgacattgtccttcagatcccttatttatccagta 299  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  21661209 ccaataattcgagagcttggtctctcccaaacaataaccagtcccccaataaaatgcctactgacattgtccttcagatcccttatttatccagta 21661114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 5176631 - 5176689
Alignment:
Q  205 ccaagaattcgagagcttggtctctcccaaccaataaccagtccccaataaaatgccta 263  Q
    |||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||    
T  5176631 ccaagaattcgagagcttggtctctcccaaccaatatcctgtcccaaatgaaatgccta 5176689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 5176563 - 5176614
Alignment:
Q  169 tttattaataatagaatatgattgcacaataggttcccaa-gaattcgagag 219  Q
    |||||| |||||||||||||||| |||||||||||||||| |||||||||||    
T  5176563 tttattgataatagaatatgattacacaataggttcccaaggaattcgagag 5176614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 20998684 - 20998742
Alignment:
Q  207 aagaattcgagagcttggtctctcccaaccaataaccagtccc-caataaaatgcctat 264  Q
    ||||||||||||||| |||||||||||| ||||| ||||||||  ||||||||||||||    
T  20998684 aagaattcgagagctcggtctctcccaatcaatatccagtcccaaaataaaatgcctat 20998742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 21012679 - 21012621
Alignment:
Q  207 aagaattcgagagcttggtctctcccaaccaataaccagtccc-caataaaatgcctat 264  Q
    ||||||||||||||| |||||||||||| ||||| ||||||||  ||||||||||||||    
T  21012679 aagaattcgagagctcggtctctcccaatcaatatccagtcccaaaataaaatgcctat 21012621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 21665797 - 21665757
Alignment:
Q  48 caagtcccacattgagtattatgggatgctcggtggagtat 88  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  21665797 caagtcccacattgagcattatgggatgttcggtggagtat 21665757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 24398711 - 24398771
Alignment:
Q  25 ggatttggatattatgtggtgcgcaagtcccacattgagtattatgggatgctcggtggag 85  Q
    |||||||| ||||||| ||||| ||||| |||||  ||||| ||||||||||||| |||||    
T  24398711 ggatttgggtattatggggtgctcaagttccacaacgagtaatatgggatgctcgatggag 24398771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 8638983 - 8638906
Alignment:
Q  205 ccaagaattcgagagcttggtctctcccaaccaataaccagtccccaataaaatgcctatcgacattgtccttcagat 282  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |   || |||||||||||||||    
T  8638983 ccaagaattagagagcttgttctctcccaaccaataaccagtccccaataaaatgtcagccgccattgtccttcagat 8638906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 41712267 - 41712340
Alignment:
Q  177 taatagaatatgattgcacaataggttcccaagaa-ttcgagagcttggtctctcccaaccaataaccagtccc 249  Q
    ||||| ||||||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  41712267 taataaaatatgattacacaatgggttcccaagaaattcgagagcttggtctctcccaatcaataaccagtccc 41712340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 8728668 - 8728609
Alignment:
Q  205 ccaagaattcgagagcttggtctctccc-aaccaataaccagtccccaataaaatgccta 263  Q
    ||||||||||||||| |||||||||||| ||||||||  ||||||| |||||||||||||    
T  8728668 ccaagaattcgagagtttggtctctcccaaaccaatattcagtcccaaataaaatgccta 8728609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 9080555 - 9080496
Alignment:
Q  205 ccaagaattcgagagcttggtctctccc-aaccaataaccagtccccaataaaatgccta 263  Q
    ||||||||||||||| |||||||||||| ||||||||  ||||||| |||||||||||||    
T  9080555 ccaagaattcgagagtttggtctctcccaaaccaatattcagtcccaaataaaatgccta 9080496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 5404619 - 5404673
Alignment:
Q  34 tattatgtggtgcgcaagtcccacattgagtattatgggatgctcggtggagtat 88  Q
    ||||||||||||  ||||||||||||   ||| ||||||||||||||||||||||    
T  5404619 tattatgtggtgtccaagtcccacatcatgtactatgggatgctcggtggagtat 5404673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 42510657 - 42510600
Alignment:
Q  205 ccaagaattcgagagcttggtctctcccaaccaataaccagtccccaataaaatgccta 263  Q
    |||||||||||||||| | || ||||||||||||||||| ||||| ||| |||||||||    
T  42510657 ccaagaattcgagagcattgt-tctcccaaccaataacctgtcccaaatgaaatgccta 42510600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 54994737 - 54994703
Alignment:
Q  205 ccaagaattcgagagcttggtctctcccaaccaat 239  Q
    |||||||||||||||||||||||||||| ||||||    
T  54994737 ccaagaattcgagagcttggtctctccctaccaat 54994703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 46288437 - 46288477
Alignment:
Q  48 caagtcccacattgagtattatgggatgctcggtggagtat 88  Q
    |||||||||||| || || ||||||||||||||||||||||    
T  46288437 caagtcccacatcgattagtatgggatgctcggtggagtat 46288477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 6515580 - 6515445
Alignment:
Q  169 tttattaataatagaatatgattgcacaataggttcccaa-gaattcgagag-ctt-ggtctctcccaaccaataaccagtccccaataaaatgcctatc 265  Q
    |||||| |||||||||||||||| |||||||||||||||| || ||| |||| ||| |||||||||||||| ||| |||||||| ||| ||||||||       
T  6515580 tttattgataatagaatatgattacacaataggttcccaaggagttcaagagtcttgggtctctcccaacctatatccagtcccaaatgaaatgcctcct 6515481  T
Q  266 gacattgtccttcagatcccttatttatccagtaac 301  Q
    ||| || ||||||||||  | |||||||| ||||||    
T  6515480 gacgttctccttcagatttcctatttatctagtaac 6515445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 21395676 - 21395710
Alignment:
Q  205 ccaagaattcgagagcttggtctctcccaaccaat 239  Q
    |||||||||||||||||||||||||||| ||||||    
T  21395676 ccaagaattcgagagcttggtctctccctaccaat 21395710  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 29526123 - 29526157
Alignment:
Q  205 ccaagaattcgagagcttggtctctcccaaccaat 239  Q
    |||||||||||||||||||||||||||| ||||||    
T  29526123 ccaagaattcgagagcttggtctctccctaccaat 29526157  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 37473629 - 37473585
Alignment:
Q  205 ccaagaattcgagagcttggtctctcccaaccaataaccagtccc 249  Q
    |||||||||||||||||  ||||||||||| ||||| ||||||||    
T  37473629 ccaagaattcgagagctctgtctctcccaatcaatatccagtccc 37473585  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 13218776 - 13218810
Alignment:
Q  206 caagaattcgagagcttggtctctcccaaccaata 240  Q
    ||||||||||||||||||||||||||||| |||||    
T  13218776 caagaattcgagagcttggtctctcccaatcaata 13218810  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 846422 - 846361
Alignment:
Q  27 atttggatattatgtggtgcgcaagtcccacattgagtattatgggatgctcggtggagtat 88  Q
    ||||||||||| || ||||| |||   |||||||||||| |||| |||||||||||||||||    
T  846422 atttggatattttggggtgctcaaagtccacattgagtagtatgagatgctcggtggagtat 846361  T

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Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 33930 - 33901
Alignment:
Q  205 ccaagaattcgagagcttggtctctcccaa 234  Q
    ||||||||||||||||||||||||||||||    
T  33930 ccaagaattcgagagcttggtctctcccaa 33901  T

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