View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12385_low_1 (Length: 935)
Name: NF12385_low_1
Description: NF12385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12385_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 11 - 605
Target Start/End: Original strand, 10913686 - 10914279
Alignment:
| Q |
11 |
cacagacgcctgcaaatcaaaggcgtgaaatgccttttactgataggaactaaagattctgaacttccaatcatgtatannnnnnnnnnaattctgaatt |
110 |
Q |
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| T |
10913686 |
cacagacgcctgcaaatcaaaggcgtgaaatgccttttactgataggaactaaagattctgaacttccaatcatgtatattttttttt-aattctaaatt |
10913784 |
T |
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| Q |
111 |
gattggacaaagttccttagccttgagtcttatcaaatttatagagaatggcatgaatgtaaaataaataaaaaagtttcatcccaccatgcaatacata |
210 |
Q |
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| T |
10913785 |
gattggacaaagttccttagccttgagtcttatcaaatttatagagaatggcatgaatgtaaaataaataaaaaggtttcaaccccccatgcaatacata |
10913884 |
T |
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| Q |
211 |
aaaagtgcagaggtaatatgtaaggtatgtaaagagaatcatacagaaacaatgtgttttacaaccaatatatccctggttgatgcccaagacgtgtatc |
310 |
Q |
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| T |
10913885 |
aaaagtgcagaggtaatatgtaaggtatgtaaagagaatcatacagaaacaatgtgttttacaaccaatatatccctggttgatgcccaagacgtgtatc |
10913984 |
T |
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| Q |
311 |
cctaaataatcaatacaaaaagcttttcctgtatcaactttcaaaagaaaatattcatgtactcctatagtattcaaatcctttcctatctcctttcttc |
410 |
Q |
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| T |
10913985 |
cctaaataatcaatacaaaaagcttttcctgtatcaactttcaaaagaaaatattcatgtactcctatagtattcaaatcctttcctatctcctttcttc |
10914084 |
T |
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| Q |
411 |
attcaccaaatactcctttccaaaattctctgtaatcaaaagctactataaaatttagttcattctctttgtcaaacttaaaatcatatatttaaattga |
510 |
Q |
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| T |
10914085 |
attcaccaaatactcctttccaaaattctctgtaatcaaaagctactataaaatttagttcattctctttgtcaaacttaaaatcatatatttaaattga |
10914184 |
T |
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| Q |
511 |
aacaacaaataaatcagctgtgaagaacccaagccatttgactcatttagttagattcatgaatgagtttgtttaaaagggtcgtcaacaaagcg |
605 |
Q |
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| T |
10914185 |
aacaacaaataaatcagctgtgaagaacccaagccatttgactcatttagttagattcatgaatgagtttgtttaaaagggtcgtcaacaaagcg |
10914279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 670 - 920
Target Start/End: Original strand, 10914344 - 10914594
Alignment:
| Q |
670 |
gttcaatcattaatctctccctctcaagcttttccatcgactgccgccattcctgttcaaacaactgtttttcatgtgcccgcctttccatcacctccct |
769 |
Q |
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| T |
10914344 |
gttcaatcattaatctctccctctcaagcttttccatcgactgccgccattcctgttcaaacaactgtttttcatgtgcccgcctttccatcacctccct |
10914443 |
T |
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| Q |
770 |
ccactgcatctccacttttaattggtgttggaaaaattccttgagcatttcttgaatattaccagtactattgtttgcattgtttgcccttgaagacttc |
869 |
Q |
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| T |
10914444 |
ccactgcatctccacttttaattggtgttggaaaaattccttgagcatttcttgaatattaccagtactattgtttgcattgtttgcccttgaagacttc |
10914543 |
T |
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| Q |
870 |
tctgttgcaattttgccagctttccttttacgtgtattgcttctcacaggt |
920 |
Q |
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| T |
10914544 |
tctgttgcaattttgccagctttccttttacgtgtattgcttctcacaggt |
10914594 |
T |
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Back To:
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