View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12385_low_11 (Length: 243)
Name: NF12385_low_11
Description: NF12385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12385_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 39396266 - 39396036
Alignment:
| Q |
1 |
tgttcaagctgaaacttcattgaatgttaagcattatattgagttaacatgttttgaattgttaagaactattaagattactggtgctgtaaccttggct |
100 |
Q |
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| T |
39396266 |
tgttcaagctgaaacttcattgaatgttaagcattatattgagctaacatgttttgaattgttaagaactattaagattactggtgctgtaaccttggct |
39396167 |
T |
|
| Q |
101 |
cgtatagtatgtcgatttataataacatagcacatcaaaaatttgcagtctagcttttagtgatagctgcacttgtctagataactgataatccctgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39396166 |
cgtatagtatgtcgatttataataacatagcacatcaaaaatttgcagtctagcttttagtgatagctgcacttgtctagataactgataatccctgcaa |
39396067 |
T |
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| Q |
201 |
aattatctttgagctaactgtatagagcaca |
231 |
Q |
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|||||||| |||||||||||||||||||||| |
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| T |
39396066 |
aattatctctgagctaactgtatagagcaca |
39396036 |
T |
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