View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12385_low_14 (Length: 238)
Name: NF12385_low_14
Description: NF12385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12385_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10877505 - 10877282
Alignment:
| Q |
1 |
aatcatcatctacttcacgatttgatccatctcaactgttacgagtattattttcatacgatatcaattttctgtaaatttaatttagaaatgtgttgtt |
100 |
Q |
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| T |
10877505 |
aatcatcatctacttcatgatttgatccatctcaactgttacgagtattattttcatacgataccaattttctgtaaatttaatttagaaatgtgttgtt |
10877406 |
T |
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| Q |
101 |
ttcaaaaagatgtggagnnnnnnntgtacgcagctttgaaaaacaatctggcacaaccacaatagccattttcacagtacaagaaaactaaaaacattca |
200 |
Q |
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| T |
10877405 |
ttcaaaaagatgtggagaaaaaaatgtacgcagctttgaaaaacaatctggcacaaccacaatagccattttcacaatacaagaaaactaaaaacattca |
10877306 |
T |
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| Q |
201 |
aaaagaatatagaagcatgttttt |
224 |
Q |
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| T |
10877305 |
aaaagaatatagaagcatgttttt |
10877282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 10865236 - 10865158
Alignment:
| Q |
131 |
cagctttgaaaaa--caatctggcacaaccacaatagccattttcacagtacaagaaaactaaaaacattcaaaaagaa |
207 |
Q |
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||||||||||||| ||| ||||||||||||||| || |||||||||||||||| || ||| | ||||||||||||| |
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| T |
10865236 |
cagctttgaaaaagacaaattggcacaaccacaatggcaattttcacagtacaaggaagctactaccattcaaaaagaa |
10865158 |
T |
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