View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12385_low_2 (Length: 653)
Name: NF12385_low_2
Description: NF12385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12385_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 320 - 634
Target Start/End: Complemental strand, 25157944 - 25157623
Alignment:
| Q |
320 |
atatctatcttcggctgttgcgaatacgtattaaacgtaatctgcaacttcattgtggtcgtagcaatctttgctttcttctcatggcttatcatacacc |
419 |
Q |
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| T |
25157944 |
atatctatcttcggctgatgcgaatatgtattaaacgtaatctgcaacttcaatgttgtcgtagcaatctttgctttcttcttatggcttatcatacatc |
25157845 |
T |
|
| Q |
420 |
ctaactacgtcaaattcaccgcaacagacgcatcccttactcaattcaatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgat |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
25157844 |
ctaactacgtcaaattcaccgcaacagacgcatcccttactcagtttaatttcaaaaacaacattacatttcactatgatctcgctctcaacatcatgat |
25157745 |
T |
|
| Q |
520 |
c-------cgaaacactaattgaagagttggtatctattatgataacatcgaaacccttgtgttttataaagatgttaggtttggttctcaaaccctagg |
612 |
Q |
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| T |
25157744 |
ccgaattccgaaaccctaatcgaagagttggtatctattatgataacatcgaaacccttgtgttttataaagatgttaggtttggttctcaaaccctagg |
25157645 |
T |
|
| Q |
613 |
aacattctttcaacgtcataaa |
634 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
25157644 |
aacattttttcaacgtcataaa |
25157623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 38 - 258
Target Start/End: Complemental strand, 25158196 - 25157973
Alignment:
| Q |
38 |
gcaagttacgcaatta---gtacatacattcctttatatatttttgttcaatctttacttcacatcaataactttaccaactagaaaatttgaatcaaat |
134 |
Q |
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| T |
25158196 |
gcaagttacgcaattattagtacataaattcctttatatatttttgttcaatctttacttcacatcaataactttaccaactagaaaacttgaatcaaat |
25158097 |
T |
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| Q |
135 |
tcttctcttttccaaagaaaaacatggccagtattcactagacatactccagttcttccattttgcggccgaatccctccggcttacaaagtgatgacga |
234 |
Q |
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| T |
25158096 |
tcttctcttttccaaagaaaaacatggctagtattcactacacatactccagttcttccattttgcagccgaatccctccggcctacaaagtgatgacga |
25157997 |
T |
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| Q |
235 |
tgacaactgctcctgctgcaaatg |
258 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
25157996 |
tgacgactgctcctgctgcaaatg |
25157973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 454 - 617
Target Start/End: Complemental strand, 25166003 - 25165840
Alignment:
| Q |
454 |
ccttactcaattcaatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgatccgaaacactaattgaagagttggtatctattat |
553 |
Q |
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| T |
25166003 |
ccttactcaattcaatttcacaaacaacaacacacttaactacaatcttgctctcaatatcacgatccgaaaccctaacagaatagttggtatctgctac |
25165904 |
T |
|
| Q |
554 |
gataacatcgaaacccttgtgttttataaagatgttaggtttggttctcaaaccctaggaacat |
617 |
Q |
| |
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| T |
25165903 |
gataacatcgaaacagttgccttttacaaagatgttaggtttgcttctcaaatcctaggaacat |
25165840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 529 - 594
Target Start/End: Complemental strand, 25164585 - 25164520
Alignment:
| Q |
529 |
taattgaagagttggtatctattatgataacatcgaaacccttgtgttttataaagatgttaggtt |
594 |
Q |
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| T |
25164585 |
taattgaagagttggtatctattatgataacatcgaaacacttgtgttttataaggatgttaggtt |
25164520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 633
Target Start/End: Complemental strand, 25170246 - 25170040
Alignment:
| Q |
427 |
cgtcaaattcaccg-caacagacgcatcccttactcaattcaatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgatccgaaa |
525 |
Q |
| |
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|||||||||||||| |||| || ||| ||||||| ||||||||||| || | | || ||||||||||| ||||||||||| || ||| | | || || |
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| T |
25170246 |
cgtcaaattcaccgtcaac-gatgcaacccttacgcaattcaattttaatgaaaccaacacacttcactacgatctcgctcttaacgtcacggttcgtaa |
25170148 |
T |
|
| Q |
526 |
cactaattgaagagttggtatctattatgataacatcgaaacccttgtgttttataaagatgttaggtttggttctcaaaccctaggaacattctttcaa |
625 |
Q |
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| ||||| ||||||||||||| || ||||| | ||| ||||| | | ||||||||| |||||| ||||| |||||||||||| | ||||||||| |
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| T |
25170147 |
ccctaatcgaagagttggtatttactatgacaccattgaaacgatggcgttttataaggatgttcagtttgcgaatcaaaccctagggagattctttcag |
25170048 |
T |
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| Q |
626 |
cgtcataa |
633 |
Q |
| |
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| T |
25170047 |
catcataa |
25170040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 25158280 - 25158244
Alignment:
| Q |
10 |
aagcagagacacagttgcataaatagaggcaagttac |
46 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||| |
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| T |
25158280 |
aagcagagacacagttacataaatagagggaagttac |
25158244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 449 - 633
Target Start/End: Original strand, 49494057 - 49494241
Alignment:
| Q |
449 |
gcatcccttactcaattcaatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgatccgaaacactaattgaagagttggtatct |
548 |
Q |
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||||| ||||||||||||||||||| ||| |||| |||||||| |||||||| | ||||| ||| ||| ||||| ||||| |||||||| || ||| |
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| T |
49494057 |
gcatcacttactcaattcaatttcacaaataacaacacacttcattatgatctttccgtcaatctcacaatcagaaaccctaatagaagagttagtgtct |
49494156 |
T |
|
| Q |
549 |
attatgataacatcgaaacccttgtgttttataaagatgttaggtttggttctcaaaccctaggaacattctttcaacgtcataa |
633 |
Q |
| |
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|||| || |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
49494157 |
attacaatgacatcgaaacactttcattttataaagattttaggtttggttctcaaaccctaggaaaattctttcaacctcataa |
49494241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 449 - 555
Target Start/End: Original strand, 37730276 - 37730382
Alignment:
| Q |
449 |
gcatcccttactcaattcaatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgatccgaaacactaattgaagagttggtatct |
548 |
Q |
| |
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||||||||||||| ||||||||||| |||||||| ||| || |||||||||| || |||| ||| | | | |||| ||||| ||||||||||||| |
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| T |
37730276 |
gcatcccttactctattcaatttcacaaacaacaacacatttaactatgatctttctgtcaacatctcggttcaaaaccctaatcaaagagttggtatcg |
37730375 |
T |
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| Q |
549 |
attatga |
555 |
Q |
| |
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||||||| |
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| T |
37730376 |
attatga |
37730382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 626
Target Start/End: Original strand, 37731319 - 37731359
Alignment:
| Q |
586 |
tgttaggtttggttctcaaaccctaggaacattctttcaac |
626 |
Q |
| |
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||||||||||||||||||| |||| |||| ||||||||||| |
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| T |
37731319 |
tgttaggtttggttctcaatccctgggaaaattctttcaac |
37731359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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