View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12385_low_3 (Length: 428)
Name: NF12385_low_3
Description: NF12385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12385_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 15134462 - 15134250
Alignment:
| Q |
19 |
ttttaatgaaatgttcacgtgggcccttgttgttcttgctttgactct--ttttctggttgtgttgagtacttgagtgtgcttttgatgtctgagaaaat |
116 |
Q |
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| T |
15134462 |
ttttaatgaaatgttcatgtgggcccttgttgttcttgctttgactctctttttctggttgtgttgagtacttgagtgtgcttttgatgtctgagaaaat |
15134363 |
T |
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| Q |
117 |
ggagattctgttactgttatagtaaagataaaattaaataaagtt---gatgtttcttgtgtatt--tataagtgtgtgttgaattggtcaattcataat |
211 |
Q |
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| T |
15134362 |
ggagattctgttactgttagagtaaagataaaattaaataaagttgatgatgtttcttgtatatttatataagtgtgtgttgaattggtcaattcataat |
15134263 |
T |
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| Q |
212 |
agtttgagttcga |
224 |
Q |
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||||||||||||| |
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| T |
15134262 |
agtttgagttcga |
15134250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 273 - 416
Target Start/End: Complemental strand, 15134252 - 15134109
Alignment:
| Q |
273 |
cgaacttgtatattgtggtaatatgctggaaaatgcaacagaagcaatttaaaaccttggttcaaattgtatttggagtatgtgaaccagcaatgtaata |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
15134252 |
cgaacttgtatattgtggtaatatgctggaaaatgcaacagaagcaatttaaaaccttggttcaaattgtatttggagtatgtgtgccaacaatgtaata |
15134153 |
T |
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| Q |
373 |
agagagtgatgagttactagtttctgaaaattggtacacaggtt |
416 |
Q |
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| T |
15134152 |
agatagtgatgagttactagtttatgaaaattggtatacaggtt |
15134109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 22892359 - 22892397
Alignment:
| Q |
232 |
gttcaaatcatggttttaaattgcggtcgcagttacact |
270 |
Q |
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| T |
22892359 |
gttcatatcatggttttaaattgcggtcgcggttacact |
22892397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 5939790 - 5939755
Alignment:
| Q |
237 |
aatcatggttttaaattgcggtcgcagttacactgc |
272 |
Q |
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| T |
5939790 |
aatcatggttttaaattgcggtcgcggttacactgc |
5939755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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