View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12385_low_9 (Length: 250)
Name: NF12385_low_9
Description: NF12385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12385_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 24950483 - 24950262
Alignment:
| Q |
12 |
agagaggtgagagtttttagtttgggtgataatatctgaaaaggcattctacagttgtgtgtatttaaggggaactcttaactggttggtcattcgaaat |
111 |
Q |
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| T |
24950483 |
agagaggtgagagtttttagtttgggtgataatatttgaaaaggtattctacagatgtgtgtatttgagcggaactcttaattggttggtcattcgaaat |
24950384 |
T |
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| Q |
112 |
gattttacatatgattggaataatcatactgttgagaattttgcaataatctcacttgattcgaggacagagacatacagacaatggttgccccctcgag |
211 |
Q |
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| T |
24950383 |
gatattacatatgattggaataatcatactgttgagaattttgcgatcatctcacttgattcgaggacagagacatacagacaattgttgccccctcgag |
24950284 |
T |
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| Q |
212 |
gttctaatgaagggttgttggt |
233 |
Q |
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|||||||||||||||||||||| |
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| T |
24950283 |
gttctaatgaagggttgttggt |
24950262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 24955936 - 24955899
Alignment:
| Q |
12 |
agagaggtgagagtttttagtttgggtgataatatctg |
49 |
Q |
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| T |
24955936 |
agagaggtgagagtttttagtttgggggataatatctg |
24955899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 24955847 - 24955807
Alignment:
| Q |
60 |
ctacagttgtgtgtatttaaggggaactcttaactggttgg |
100 |
Q |
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| T |
24955847 |
ctacagttgtgtgtatttgagcggatctcttaactggttgg |
24955807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 24385056 - 24385127
Alignment:
| Q |
160 |
atctcacttgattcgaggacagagacatacagacaatggttgccccctcgaggttctaatgaagggttgttg |
231 |
Q |
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| T |
24385056 |
atctcacttaatttggggacagagaaatacacacaattgttgccccctcaaggttctgatgaagtgttgttg |
24385127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 24391068 - 24391102
Alignment:
| Q |
12 |
agagaggtgagagtttttagtttgggtgataatat |
46 |
Q |
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| T |
24391068 |
agagatgtgagagtttttagtttgggtgataatat |
24391102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 24391252 - 24391316
Alignment:
| Q |
143 |
ttgagaattttgcaataatctcacttgattcgaggacagagacatacagacaatggttgccccct |
207 |
Q |
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||||| ||| ||| || ||||||||||||| | ||| ||||||||||| ||||| |||||||||| |
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| T |
24391252 |
ttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgttgccccct |
24391316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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