View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12386_high_2 (Length: 285)
Name: NF12386_high_2
Description: NF12386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12386_high_2 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 2289665 - 2289931
Alignment:
| Q |
19 |
ataactgctatcagctgtaccattttctttctccaattcaactggtgcttcctctttgggtttttcagaaacaacagcgtccaaagcttccacagaaagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2289665 |
ataactgctatcagctgtaccattttctttctccaattcaactggtgcttcctctttgggtttttcagcaacaacagcgtccaaagcttccacagaaagt |
2289764 |
T |
|
| Q |
119 |
tgttccaccggttccgccagagatggttcttccacttgaggcttttccaattcagctgtactgttttctttttccaactcaactggtgcctcccctgaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2289765 |
tgttccaccggttccgccagagatggttcttccacttgaggcttttccaattcagctgttctgttttctttttccaactcaactggtgcctcccctgaca |
2289864 |
T |
|
| Q |
219 |
gtttttcagcaacaacaggatccaaagatttctcaagaagtttttctgccggttccgctattgatat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
2289865 |
gtttttcagcaacaacaggatccaaagatttctcaagaagttgttctgccggttccgccattgatat |
2289931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 2289828 - 2289957
Alignment:
| Q |
41 |
ttttctttctccaattcaactggtgcttcctctttgggtttttcagaaacaacagcgtccaaagcttccacagaaagttgttccaccggttccgccagag |
140 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||| || ||||||||| |||||||| ||||||| || | || ||||||||| |||||||||||| | |
|
|
| T |
2289828 |
ttttctttttccaactcaactggtgcctcccctgacagtttttcagcaacaacaggatccaaagatttctcaagaagttgttctgccggttccgccattg |
2289927 |
T |
|
| Q |
141 |
atggttcttccacttgaggcttttccaatt |
170 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
2289928 |
atatttcttccacttgaggcttttccaatt |
2289957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 2290056 - 2290147
Alignment:
| Q |
77 |
ggtttttcagaaacaacagcgtccaaagcttccacagaaagttgttccaccggttccgccagagatggttcttccacttgaggcttttccaa |
168 |
Q |
| |
|
|||||||||| ||||| || | ||||||||| |||||| ||||| ||||||||| | || ||| | ||||||||||||||||||||||| |
|
|
| T |
2290056 |
ggtttttcagcgacaactgcattcaaagcttcttcagaaacttgtttcaccggttcagtcatagaagtgtcttccacttgaggcttttccaa |
2290147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University