View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12386_low_1 (Length: 532)
Name: NF12386_low_1
Description: NF12386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12386_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 56 - 447
Target Start/End: Original strand, 30181713 - 30182104
Alignment:
| Q |
56 |
tagtgtgttctgtcttatacaggtcaaatttctgttgaaagtctcatctaggtacaagtgaaaacaattaacaatttagtatttataaaacacacatgag |
155 |
Q |
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| T |
30181713 |
tagtgtgttctgtcttatacaggtcaaatttctgttgaaagtctcatctaggtacaagtgaaaacaattaacaatttagtatttataaaacacacatgag |
30181812 |
T |
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| Q |
156 |
catcacaaaaaccttgtcggctcaaggattagtctcgtaacaggtccaaagggcctaagccgttggaataacttgaggtgcctactggagtcaaagatcc |
255 |
Q |
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| T |
30181813 |
catcacaaaaaccttgtcggctcaaggattagtctcgtaacatgtccaaagggcctaagccgttggaataacttggggtgcctactggagtcaaagatcc |
30181912 |
T |
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| Q |
256 |
taattaaggtgagttagaaagaaaaacacacgcacatgagcagctgtgcagtatgcgaattaaagaacaacagttacaacaggaaagagtgcaaatctgc |
355 |
Q |
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| T |
30181913 |
taattaaggtgagttagaaagaaaaacacacacacatgagcagctgtgcagtatgcgcattaaagaacaacagttacaacaggaaagagtgcaaatctgc |
30182012 |
T |
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| Q |
356 |
aataatcttatcagttaccacagtcataagttgtacttactaataacttatatcaattttaaggttgtgtttcagcagaaacaatcaaatat |
447 |
Q |
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| T |
30182013 |
aataatcttatcagttaccacagtcataagttgtacttactaataacttatatcaattttaaggttgtgtttcagcagaaacaaccaaatat |
30182104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 405 - 520
Target Start/End: Original strand, 30182101 - 30182217
Alignment:
| Q |
405 |
atatcaattttaaggttgtgtttcagcagaaacaatcaaatatgcctaattattacatataattcttaaaccccttgtttcctc-taagagtttaatctt |
503 |
Q |
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| T |
30182101 |
atatcaattttaaggttgtgtttcagcagaaacaaccaaatatgcctaattattacatataattcttaaaccccttgtttcctcttaagagtttaatctt |
30182200 |
T |
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| Q |
504 |
ttatgtactcacaggtt |
520 |
Q |
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| T |
30182201 |
ttatgtactcacaggtt |
30182217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 26634455 - 26634530
Alignment:
| Q |
185 |
tagtctcgtaacaggtccaaagggcctaagccgttggaataacttgaggtgcctactggagtcaaagatcctaatta |
261 |
Q |
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| T |
26634455 |
tagtctcatagcaggcccaaagggcctaagccgtagga-tacattggggagcctactggggtcaaagatcctaatta |
26634530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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