View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12386_low_2 (Length: 471)

Name: NF12386_low_2
Description: NF12386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12386_low_2
NF12386_low_2
[»] chr5 (22 HSPs)
chr5 (12-455)||(2611062-2611509)
chr5 (227-380)||(7609530-7609683)
chr5 (225-381)||(14863304-14863460)
chr5 (254-372)||(21052626-21052743)
chr5 (254-372)||(11320124-11320240)
chr5 (255-376)||(35185255-35185375)
chr5 (255-374)||(22180251-22180369)
chr5 (232-360)||(31619295-31619421)
chr5 (228-379)||(12187154-12187305)
chr5 (252-378)||(6102824-6102949)
chr5 (281-370)||(12036308-12036395)
chr5 (227-341)||(8435026-8435142)
chr5 (328-376)||(18677920-18677968)
chr5 (251-369)||(1447555-1447673)
chr5 (228-321)||(16801998-16802092)
chr5 (288-378)||(3600142-3600231)
chr5 (386-425)||(12241066-12241105)
chr5 (227-319)||(7319227-7319321)
chr5 (274-372)||(11815929-11816026)
chr5 (274-368)||(27544607-27544700)
chr5 (225-321)||(28511197-28511295)
chr5 (386-427)||(39828474-39828515)
[»] chr3 (33 HSPs)
chr3 (228-380)||(44291220-44291372)
chr3 (226-380)||(42163596-42163751)
chr3 (225-379)||(15671108-15671262)
chr3 (226-349)||(43862910-43863034)
chr3 (230-377)||(27143974-27144120)
chr3 (223-367)||(32720523-32720667)
chr3 (227-369)||(43652470-43652612)
chr3 (279-379)||(44041315-44041415)
chr3 (260-379)||(17109525-17109644)
chr3 (227-371)||(23208143-23208285)
chr3 (224-370)||(43014611-43014761)
chr3 (263-379)||(35322016-35322129)
chr3 (251-360)||(36258672-36258782)
chr3 (248-375)||(49710937-49711062)
chr3 (225-359)||(52992414-52992546)
chr3 (254-363)||(47877284-47877393)
chr3 (251-372)||(48338807-48338928)
chr3 (225-321)||(32961149-32961246)
chr3 (225-339)||(20585772-20585888)
chr3 (282-358)||(49419063-49419139)
chr3 (273-364)||(55446750-55446839)
chr3 (306-378)||(38359097-38359168)
chr3 (274-381)||(4020116-4020222)
chr3 (289-372)||(48252269-48252351)
chr3 (251-372)||(635703-635824)
chr3 (385-427)||(35990535-35990577)
chr3 (274-378)||(28709558-28709661)
chr3 (274-372)||(1711922-1712019)
chr3 (274-311)||(2379662-2379699)
chr3 (389-425)||(35060572-35060609)
chr3 (298-379)||(49261822-49261902)
chr3 (274-343)||(54801356-54801425)
chr3 (388-420)||(42088735-42088767)
[»] chr7 (28 HSPs)
chr7 (228-381)||(22035703-22035857)
chr7 (225-380)||(45907024-45907179)
chr7 (253-370)||(36636008-36636124)
chr7 (258-375)||(19689502-19689618)
chr7 (227-370)||(8117444-8117587)
chr7 (254-377)||(16861675-16861797)
chr7 (226-369)||(41434673-41434813)
chr7 (229-341)||(21798770-21798882)
chr7 (255-370)||(16563469-16563584)
chr7 (255-370)||(16602078-16602193)
chr7 (225-376)||(19777886-19778037)
chr7 (227-341)||(26203047-26203162)
chr7 (254-381)||(37928297-37928424)
chr7 (226-341)||(7833772-7833889)
chr7 (277-378)||(31487702-31487802)
chr7 (328-380)||(27364664-27364716)
chr7 (252-381)||(39786441-39786570)
chr7 (255-339)||(3624254-3624339)
chr7 (227-378)||(47445348-47445500)
chr7 (298-378)||(19677037-19677116)
chr7 (251-341)||(16979936-16980027)
chr7 (274-341)||(30774946-30775013)
chr7 (385-427)||(9483391-9483433)
chr7 (255-378)||(16685729-16685854)
chr7 (255-378)||(17659965-17660090)
chr7 (385-435)||(21454242-21454292)
chr7 (281-319)||(32279705-32279742)
chr7 (289-378)||(1359708-1359796)
[»] chr2 (28 HSPs)
chr2 (228-380)||(19889716-19889869)
chr2 (229-365)||(21646482-21646618)
chr2 (226-308)||(11610471-11610554)
chr2 (250-349)||(37913024-37913123)
chr2 (251-321)||(18243787-18243857)
chr2 (249-347)||(4141633-4141730)
chr2 (226-379)||(40574134-40574288)
chr2 (226-378)||(1870486-1870638)
chr2 (281-374)||(23788402-23788494)
chr2 (255-370)||(32345477-32345591)
chr2 (255-372)||(13738393-13738510)
chr2 (310-375)||(18243299-18243364)
chr2 (247-380)||(19994908-19995041)
chr2 (274-336)||(27896481-27896543)
chr2 (227-339)||(35501370-35501483)
chr2 (255-375)||(23760588-23760706)
chr2 (386-427)||(44013877-44013918)
chr2 (274-370)||(13717196-13717290)
chr2 (288-372)||(13835868-13835951)
chr2 (225-339)||(16498137-16498253)
chr2 (288-379)||(5444483-5444573)
chr2 (251-341)||(8580506-8580597)
chr2 (282-376)||(11610374-11610467)
chr2 (386-427)||(3103532-3103573)
chr2 (274-378)||(4557589-4557693)
chr2 (297-334)||(44818428-44818465)
chr2 (276-344)||(19606296-19606364)
chr2 (386-426)||(41508544-41508584)
[»] chr8 (34 HSPs)
chr8 (247-379)||(28462534-28462665)
chr8 (223-366)||(900237-900381)
chr8 (223-356)||(37919365-37919499)
chr8 (253-379)||(39065527-39065650)
chr8 (254-377)||(39209356-39209477)
chr8 (233-371)||(39534137-39534275)
chr8 (253-379)||(41675662-41675787)
chr8 (254-379)||(29795503-29795627)
chr8 (253-372)||(30924829-30924948)
chr8 (269-335)||(20821903-20821969)
chr8 (254-372)||(10029159-10029277)
chr8 (251-378)||(20542381-20542508)
chr8 (265-369)||(42654596-42654699)
chr8 (274-372)||(41726914-41727011)
chr8 (253-349)||(25347643-25347737)
chr8 (253-309)||(38362264-38362320)
chr8 (274-341)||(14110642-14110708)
chr8 (223-372)||(35901414-35901563)
chr8 (277-378)||(13873718-13873818)
chr8 (226-343)||(38388490-38388610)
chr8 (277-381)||(44648927-44649030)
chr8 (274-381)||(6270139-6270244)
chr8 (298-372)||(3347509-3347582)
chr8 (281-378)||(40607324-40607419)
chr8 (283-341)||(1988807-1988865)
chr8 (253-314)||(18131188-18131249)
chr8 (274-372)||(18200679-18200776)
chr8 (226-341)||(22266251-22266366)
chr8 (223-295)||(1551461-1551534)
chr8 (385-426)||(10170397-10170438)
chr8 (385-422)||(33697156-33697193)
chr8 (277-378)||(40489871-40489970)
chr8 (251-378)||(11150917-11151043)
chr8 (228-372)||(17720176-17720322)
[»] chr1 (38 HSPs)
chr1 (227-377)||(31884453-31884603)
chr1 (227-372)||(26855824-26855969)
chr1 (255-376)||(33827818-33827939)
chr1 (255-376)||(33840026-33840147)
chr1 (224-357)||(44109083-44109217)
chr1 (223-349)||(50127368-50127495)
chr1 (255-374)||(50468802-50468921)
chr1 (252-378)||(40391209-40391335)
chr1 (223-374)||(15419646-15419798)
chr1 (230-375)||(30627610-30627755)
chr1 (228-380)||(48282881-48283023)
chr1 (228-305)||(16963639-16963716)
chr1 (226-320)||(27742523-27742617)
chr1 (254-376)||(19066858-19066979)
chr1 (254-376)||(19114748-19114869)
chr1 (248-376)||(13534491-13534618)
chr1 (228-370)||(13969099-13969242)
chr1 (277-381)||(46295860-46295963)
chr1 (288-376)||(20471326-20471413)
chr1 (288-376)||(20560124-20560211)
chr1 (298-378)||(8001739-8001818)
chr1 (249-376)||(18910397-18910525)
chr1 (274-378)||(39238849-39238952)
chr1 (283-339)||(11802935-11802991)
chr1 (274-370)||(27688497-27688592)
chr1 (274-369)||(27517-27610)
chr1 (253-296)||(20359312-20359355)
chr1 (253-296)||(20551615-20551658)
chr1 (225-311)||(36160536-36160623)
chr1 (274-372)||(11449078-11449175)
chr1 (250-335)||(38597473-38597559)
chr1 (385-427)||(43328474-43328516)
chr1 (385-427)||(43609828-43609870)
chr1 (247-296)||(20471726-20471775)
chr1 (247-296)||(20559762-20559811)
chr1 (274-311)||(33148917-33148954)
chr1 (276-368)||(10226464-10226555)
chr1 (274-378)||(26829510-26829613)
[»] scaffold0006 (1 HSPs)
scaffold0006 (226-381)||(38771-38925)
[»] chr4 (34 HSPs)
chr4 (223-375)||(31647687-31647839)
chr4 (228-364)||(38320124-38320261)
chr4 (255-381)||(19147137-19147262)
chr4 (255-376)||(47397604-47397724)
chr4 (270-374)||(31241947-31242051)
chr4 (228-303)||(20542717-20542792)
chr4 (281-377)||(51100019-51100114)
chr4 (304-377)||(38319533-38319606)
chr4 (227-341)||(50086660-50086776)
chr4 (254-372)||(20775069-20775187)
chr4 (254-351)||(3319268-3319365)
chr4 (300-365)||(20542600-20542664)
chr4 (251-378)||(27284066-27284193)
chr4 (275-367)||(37431785-37431876)
chr4 (268-324)||(51759207-51759263)
chr4 (253-372)||(53142777-53142896)
chr4 (289-380)||(41142284-41142374)
chr4 (268-335)||(54248993-54249060)
chr4 (274-372)||(22019621-22019718)
chr4 (281-381)||(13967870-13967969)
chr4 (300-375)||(14347118-14347191)
chr4 (274-378)||(55090799-55090901)
chr4 (274-369)||(2565412-2565506)
chr4 (274-381)||(12094976-12095082)
chr4 (281-372)||(16341100-16341190)
chr4 (392-427)||(30127684-30127719)
chr4 (281-372)||(45921337-45921426)
chr4 (385-435)||(20119952-20120002)
chr4 (389-427)||(24875735-24875773)
chr4 (292-366)||(44190255-44190328)
chr4 (226-341)||(16072310-16072427)
chr4 (274-335)||(19480555-19480616)
chr4 (386-427)||(50269864-50269905)
chr4 (230-320)||(48202457-48202549)
[»] chr6 (16 HSPs)
chr6 (226-377)||(17506233-17506386)
chr6 (253-374)||(21809802-21809922)
chr6 (248-369)||(4803147-4803268)
chr6 (254-335)||(10008190-10008272)
chr6 (289-369)||(2398041-2398120)
chr6 (251-378)||(6770827-6770955)
chr6 (274-370)||(5611129-5611224)
chr6 (249-308)||(19418587-19418647)
chr6 (255-341)||(10252964-10253051)
chr6 (268-343)||(18493255-18493330)
chr6 (281-372)||(20208011-20208100)
chr6 (281-372)||(22102034-22102123)
chr6 (225-341)||(17900773-17900891)
chr6 (277-370)||(26608907-26608998)
chr6 (385-425)||(2820376-2820416)
chr6 (251-370)||(32134040-32134159)
[»] scaffold0034 (1 HSPs)
scaffold0034 (246-380)||(22414-22547)
[»] scaffold0078 (1 HSPs)
scaffold0078 (256-370)||(861-975)
[»] scaffold0886 (1 HSPs)
scaffold0886 (255-380)||(1095-1219)
[»] scaffold0117 (1 HSPs)
scaffold0117 (255-347)||(16852-16944)
[»] scaffold1372 (1 HSPs)
scaffold1372 (273-380)||(1261-1378)
[»] scaffold0068 (1 HSPs)
scaffold0068 (255-376)||(52011-52131)
[»] scaffold0299 (1 HSPs)
scaffold0299 (251-372)||(18014-18136)
[»] scaffold0039 (1 HSPs)
scaffold0039 (252-369)||(29988-30105)
[»] scaffold0205 (1 HSPs)
scaffold0205 (386-427)||(21424-21465)
[»] scaffold0079 (1 HSPs)
scaffold0079 (281-372)||(51671-51761)
[»] scaffold0592 (1 HSPs)
scaffold0592 (247-296)||(9024-9073)
[»] scaffold0024 (1 HSPs)
scaffold0024 (385-422)||(151415-151452)
[»] scaffold0002 (1 HSPs)
scaffold0002 (316-372)||(120729-120784)


Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 455
Target Start/End: Complemental strand, 2611509 - 2611062
Alignment:
Q  12 cctgtgatccattcacttggtacaccggcttcaatctgtttttcgcacgcagcagtagaaatgcaacaagtccacgcatgaactttatctatagctatat 111  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2611509 cctgtgatccattcacttggtacaccggcttaaatctgtttttcgcacgcagcagtagaaatgcaacaagtccacgcatgaactttatctatagctatat 2611410  T
Q  112 agttactcacctgcaattggaagaaagcaagccatagatttctgaagtacaagcatgaaaaactcgatgcaactgaagcagcgacacaaaccaggacacg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2611409 agttactcacctgcaattggaagaaagcaagccatagatttctgaagtacaagcatgaaaaactcgatgcaactgaagcagcgacacaaaccaggacacg 2611310  T
Q  212 atac--acacgtcaataaggagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattatta 308  Q
    ||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2611309 atactgacacgtcaataaggagaatgttaaccagggcccctggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattatta 2611210  T
Q  309 cttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc-cgacccataataatttgagaaaataaaat 407  Q
    ||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  2611209 cttaataaaaagtgacagcttatatttccaagacataaatttctatttatagattccttaaccagtgcccttgacccataataatttgagaaaataaaat 2611110  T
Q  408 tattgaatgtaaccacatgtcttagtgtgtcatgtcggacatcagaca 455  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2611109 tattgaatgtaaccacatgtcctagtgtgtcatgtcggacatcagaca 2611062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 227 - 380
Target Start/End: Complemental strand, 7609683 - 7609530
Alignment:
Q  227 aggagaatgttaaccagggc-cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 325  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |    
T  7609683 aggagaatgttaaccagtgctcccggggcattggttaagcaccaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaaatgata 7609584  T
Q  326 gcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 380  Q
    | |||||||||||| | ||||| || || ||||||||||||||| ||||||||||    
T  7609583 gtttatatttccaaaacagaaa-ttctaattatagattccttaatcagtgccccg 7609530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 225 - 381
Target Start/End: Original strand, 14863304 - 14863460
Alignment:
Q  225 taaggagaatgttaaccagggccccgggg-cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 323  Q
    ||||||||||||||| ||| ||||| ||  ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  14863304 taaggagaatgttaatcagtgcccccggaacattggttaagcaccaaaaaaagtaagtttttattaaaaattaatgtaattattacttgataaaaagtga 14863403  T
Q  324 cagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccga 381  Q
    ||| |||||||| ||||| | ||| || ||||||||||||| |||||||||| |||||    
T  14863404 cagtttatattttcaagacataaa-ttatatttatagattctttaaccagtgtcccga 14863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 254 - 372
Target Start/End: Complemental strand, 21052743 - 21052626
Alignment:
Q  254 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 353  Q
    |||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||| |||||| |||| |||||    
T  21052743 cattggttaagcaccaaaagaagtaagtttttattaaaaaatcatgtaattattacttgataaaaagtgacagtttatatttgcaagatggaaa-tttta 21052645  T
Q  354 tttatagattccttaacca 372  Q
    |||||| ||||||||||||    
T  21052644 tttataaattccttaacca 21052626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 254 - 372
Target Start/End: Original strand, 11320124 - 11320240
Alignment:
Q  254 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 353  Q
    ||||||||||||||||||  |||| | ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| |||||    
T  11320124 cattggttaagcaccaaaa-aagttaatttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttctaagatagaaa-tttta 11320221  T
Q  354 tttatagattccttaacca 372  Q
     ||||||||||||||||||    
T  11320222 attatagattccttaacca 11320240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 255 - 376
Target Start/End: Original strand, 35185255 - 35185375
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| ||||| | ||| || |||    
T  35185255 attggttaagcaccaaataaaataagtttttattaaaaagtaatgtaattattactaaat-aaaagtgacagtttatattttcaagacataaaattctat 35185353  T
Q  355 ttatagattccttaaccagtgc 376  Q
    |||||||||| |||||||||||    
T  35185354 ttatagattctttaaccagtgc 35185375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 255 - 374
Target Start/End: Complemental strand, 22180369 - 22180251
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    |||||||||||||||||| || ||| ||||||||||||| |||| ||||||||| |||||||||| |||||| |||||||| ||| ||||||| ||||||    
T  22180369 attggttaagcaccaaataaaataaatttttattaaaaaataatataattattatttaataaaaa-tgacagtttatattttcaaaatagaaaattttat 22180271  T
Q  355 ttatagattccttaaccagt 374  Q
    ||||||||||||||| ||||    
T  22180270 ttatagattccttaatcagt 22180251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 360
Target Start/End: Original strand, 31619295 - 31619421
Alignment:
Q  232 aatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttat 331  Q
    |||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || || | ||||||| | ||||    
T  31619295 aatgttaaccagtgcctctgggcattggttaagcaccaaatgaagtaaatttttattaaaaagtaatgtaattattatttcat-agaagtgac-gtttat 31619392  T
Q  332 atttccaagatagaaatttttatttatag 360  Q
    ||||| |||| ||||| || |||||||||    
T  31619393 atttctaagacagaaaattctatttatag 31619421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 228 - 379
Target Start/End: Original strand, 12187154 - 12187305
Alignment:
Q  228 ggagaatgttaaccagggccccgg-ggcattggttaagcaccaaatgaagtaagtttttatt-aaaaagtaatgtaattattacttaataaaaagtgaca 325  Q
    |||||||||||||| | | ||| | ||||||| ||||||||||||| | ||||||||||||| ||||| |||||||||||||||||  |||||||||||     
T  12187154 ggagaatgttaacctgtgtccctgaggcattgattaagcaccaaataaggtaagtttttattaaaaaaataatgtaattattactt-gtaaaaagtgacc 12187252  T
Q  326 gcttatatttccaagatagaaatttttatttatagattccttaaccagtgcccc 379  Q
    | |||||||||||||| | ||| || ||||| ||||||| ||||||| ||||||    
T  12187253 gtttatatttccaagaca-aaaattctatttgtagattctttaaccaatgcccc 12187305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 252 - 378
Target Start/End: Original strand, 6102824 - 6102949
Alignment:
Q  252 ggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattt 350  Q
    ||||||||||||||| |||||  |||||| |||||||||||| ||| ||||||||||||||||| |||||| | | |||||||||  |||| | || |||    
T  6102824 ggcattggttaagcaaccaaaataagtaactttttattaaaa-gtattgtaattattacttaatcaaaagtcaaaacttatattttgaagaca-aatttt 6102921  T
Q  351 ttatttatagattccttaaccagtgccc 378  Q
     ||||||||||||||||||||| |||||    
T  6102922 ctatttatagattccttaaccattgccc 6102949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 370
Target Start/End: Complemental strand, 12036395 - 12036308
Alignment:
Q  281 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaac 370  Q
    |||||||||||| ||||||||||||||||||||| |||||| | | ||||||||| ||||| | || ||| ||||||||| |||||||||    
T  12036395 tttttattaaaa-gtaatgtaattattacttaatcaaaagtcaaaacttatattttcaagaca-aattttctatttataggttccttaac 12036308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 8435026 - 8435142
Alignment:
Q  227 aggagaatgttaaccagggccccgg-ggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 324  Q
    ||||||||||||||||| ||||| | ||||||||||||||| |||||  ||||||| |||||||||||| |  | ||||||||| ||  | |||||| ||    
T  8435026 aggagaatgttaaccagtgcccctgaggcattggttaagcatccaaaataagtaagattttattaaaaaatggtataattattagttggtcaaaagttac 8435125  T
Q  325 agcttatatttccaaga 341  Q
    |  ||||||||||||||    
T  8435126 actttatatttccaaga 8435142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 18677968 - 18677920
Alignment:
Q  328 ttatatttccaagatagaaatttttatttatagattccttaaccagtgc 376  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||||    
T  18677968 ttatattttcaagatagaaaattctatttatagattccttaaccagtgc 18677920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 369
Target Start/End: Complemental strand, 1447673 - 1447555
Alignment:
Q  251 gggcattggttaagcaccaaatg-aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 349  Q
    |||||||||||||||| ||||   ||||||||||||| | ||||||| ||||||||||||||  | ||  || ||||||||||||||||| ||| |||||    
T  1447673 gggcattggttaagcaacaaaaataagtaagtttttaatgaaaagtagtgtaattattacttggtcaactgtaacagcttatatttccaaaata-aaatt 1447575  T
Q  350 tttatttatagattccttaa 369  Q
    | || |||| |||| |||||    
T  1447574 tctacttatggatttcttaa 1447555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 321
Target Start/End: Original strand, 16801998 - 16802092
Alignment:
Q  228 ggagaatgttaaccagggccc-cggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 321  Q
    |||||||||||| ||| |||| | ||| |||||||||||| |||||  || ||| ||||||| |||||||||||||||||||||||||| ||||||    
T  16801998 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttat-aaaaagtaatgtaattattacttaatcaaaagt 16802092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 3600142 - 3600231
Alignment:
Q  288 taaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 378  Q
    ||||||||||||||||||||||||||| |||| | | | ||||||||| ||||| | ||  |||||||||||| || |||||||| |||||    
T  3600142 taaaaagtaatgtaattattacttaattaaaattcaaaacttatattttcaagaca-aatattttatttatagttttcttaaccattgccc 3600231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Original strand, 12241066 - 12241105
Alignment:
Q  386 taataatttgagaaaataaaattattgaatgtaaccacat 425  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  12241066 taataatttgagacaatgaaattattgaatgtaaccacat 12241105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 7319227 - 7319321
Alignment:
Q  227 aggagaatgttaaccagggccccg-gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaa 319  Q
    ||||||||||||| ||| |||||  |||||||||||||||| |||||   |||||| || |||||||||||  |||||| ||||||| |||||||    
T  7319227 aggagaatgttaaacagtgccccatgggcattggttaagcatccaaaaagagtaagattctattaaaaagttgtgtaataattacttgataaaaa 7319321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 372
Target Start/End: Original strand, 11815929 - 11816026
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    |||||||||||||| |||||    |||||| ||||||| || |||||| ||| ||||||||| ||||| | |||||| ||||| ||||||| |||||||    
T  11815929 aagtaagtttttatgaaaaatatgtgtaatcattactttatcaaaagtaacatcttatattttcaagaca-aaatttctatttttagattcattaacca 11816026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 368
Target Start/End: Original strand, 27544607 - 27544700
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattcctta 368  Q
    |||||| |||| || |||||||  |||||| ||||| | ||||||| | ||| ||||||||| ||||||| |||||| ||||| |||||||||||    
T  27544607 aagtaaattttcatgaaaaagttgtgtaatcattacatgataaaaaataacatcttatattttcaagata-aaatttctatttgtagattcctta 27544700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 321
Target Start/End: Complemental strand, 28511295 - 28511197
Alignment:
Q  225 taaggagaatgttaaccagggccccggggcattggttaagc-accaaatgaagtaagtttttat-taaaaagtaatgtaattattacttaataaaaagt 321  Q
    |||| |||||||||||| | |||| |||| ||||||||||| ||||||  | ||||||||||||  |||||||| ||||||||||| || || ||||||    
T  28511295 taagtagaatgttaaccggtgccctggggtattggttaagcaaccaaaacatgtaagtttttataaaaaaagtagtgtaattattaattcatcaaaagt 28511197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 39828474 - 39828515
Alignment:
Q  386 taataatttgagaaaataaaattattgaatgtaaccacatgt 427  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  39828474 taataatttgagaatatgaaataattgaatgtaaccacatgt 39828515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 228 - 380
Target Start/End: Complemental strand, 44291372 - 44291220
Alignment:
Q  228 ggagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacag 326  Q
    |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44291372 ggagaatgttaaccagtgcccccggggcattggttaagcaccaaaagaagtaagtatttattaaaaagtaatgtaattattacttaataaaaagtgacag 44291273  T
Q  327 cttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 380  Q
     |||||||||||||| ||||| || |||||||||||||||||||||||||||||    
T  44291272 tttatatttccaagacagaaa-ttctatttatagattccttaaccagtgccccg 44291220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 226 - 380
Target Start/End: Complemental strand, 42163751 - 42163596
Alignment:
Q  226 aaggagaatgttaaccagggcc-ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 324  Q
    |||| ||||||||||| | ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42163751 aaggggaatgttaaccggtgcctccggggcattggttacacaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 42163652  T
Q  325 agcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 380  Q
     | |||||||||||||| ||||| || |||| ||||||||||||||||||||||||    
T  42163651 ggtttatatttccaagacagaaaattctattaatagattccttaaccagtgccccg 42163596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 225 - 379
Target Start/End: Complemental strand, 15671262 - 15671108
Alignment:
Q  225 taaggagaatgttaaccagggccc-cggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 323  Q
    |||||||||||||||||||  |   ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15671262 taaggagaatgttaaccagtacatacggagcattggttaagaaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtga 15671163  T
Q  324 cagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcccc 379  Q
    ||| ||||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  15671162 cagtttatatttcgaagaca-aaaattttatttatagattccttaaccagtgcccc 15671108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 226 - 349
Target Start/End: Original strand, 43862910 - 43863034
Alignment:
Q  226 aaggagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 324  Q
    |||||||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43862910 aaggagaatgttaaccggtgcccctggggcattggttaagccccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaagagtgac 43863009  T
Q  325 agcttatatttccaagatagaaatt 349  Q
    || |||||||||||||| |||||||    
T  43863010 agtttatatttccaagacagaaatt 43863034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 230 - 377
Target Start/End: Original strand, 27143974 - 27144120
Alignment:
Q  230 agaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagctt 329  Q
    |||||||||||||  ||||| || ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| ||    
T  27143974 agaatgttaaccaatgccccagg-cattggttaagcaacaaatgaactaagtttttattaaaaaataatgtaattattacttaataaaaagtcacagttt 27144072  T
Q  330 atatttccaagatagaaatttttatttatagattccttaaccagtgcc 377  Q
    ||||||| || | ||||| || |||||||||||| |||||||||||||    
T  27144073 atatttctaatacagaaaattctatttatagatttcttaaccagtgcc 27144120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 223 - 367
Target Start/End: Complemental strand, 32720667 - 32720523
Alignment:
Q  223 aataaggagaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg 322  Q
    ||||||||||||||||| ||| |||| || | ||||||||||||| |||| |||||||||||||||||||| |||| |||||||||||||||||| ||||    
T  32720667 aataaggagaatgttaatcagtgccctggagtattggttaagcactaaattaagtaagtttttattaaaaaataatataattattacttaataaatagtg 32720568  T
Q  323 acagcttatatttccaagatagaaatttttatttatagattcctt 367  Q
    |||| |||||||| ||||| ||||| || |||| |||||||||||    
T  32720567 acagtttatattttcaagaaagaaaattctattaatagattcctt 32720523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 227 - 369
Target Start/End: Complemental strand, 43652612 - 43652470
Alignment:
Q  227 aggagaatgttaaccagggccc-cggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 325  Q
    ||||||||||||||||| |||  |||| |||  ||||||||||||||||||||||||| || |||||||||||||||||||||  | ||||||| |||||    
T  43652612 aggagaatgttaaccagtgccttcgggacatccgttaagcaccaaatgaagtaagtttctactaaaaagtaatgtaattattatctgataaaaaatgaca 43652513  T
Q  326 gcttatatttccaagatagaaatttttatttatagattccttaa 369  Q
    | |||||||||||||||||||| |||||||||||||||||||||    
T  43652512 gattatatttccaagatagaaa-ttttatttatagattccttaa 43652470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 279 - 379
Target Start/End: Complemental strand, 44041415 - 44041315
Alignment:
Q  279 agtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 378  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||| |||||||||||||    
T  44041415 agtttatattaaaaagtaatgtaattattacttaataaaaagtgacagtttatattaccaagacagaaaattctatttatagattcattaaccagtgccc 44041316  T
Q  379 c 379  Q
    |    
T  44041315 c 44041315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 260 - 379
Target Start/End: Complemental strand, 17109644 - 17109525
Alignment:
Q  260 ttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttata 359  Q
    |||| ||| |||| |||||| ||||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||||| || ||||||||    
T  17109644 ttaaacactaaataaagtaaatttttattaaaaagttatgtaattattacttaataaaatgttacagtttatatttccaagatagaaaattctatttata 17109545  T
Q  360 gattccttaaccagtgcccc 379  Q
     ||| ||||||| |||||||    
T  17109544 aatttcttaacccgtgcccc 17109525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 227 - 371
Target Start/End: Complemental strand, 23208285 - 23208143
Alignment:
Q  227 aggagaatgttaaccagggccccgggg-cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 325  Q
    ||||||||||||||| | ||||| ||| ||||||||||  ||||||| || || ||||||||||||||||||||||||||   |||||||||||||||||    
T  23208285 aggagaatgttaaccggtgcccccgggacattggttaaataccaaataaaatacgtttttattaaaaagtaatgtaatta---cttaataaaaagtgaca 23208189  T
Q  326 gcttatatttccaagatagaaatttttatttatagattccttaacc 371  Q
    | |||||||| ||||| ||||| || |||||||||||| |||||||    
T  23208188 gtttatattttcaagacagaaaattctatttatagatttcttaacc 23208143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 370
Target Start/End: Original strand, 43014611 - 43014761
Alignment:
Q  224 ataaggagaatgttaaccagggccc--cggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaat---tattacttaataaaa 318  Q
    |||||||||||||||| ||| ||||  |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||   ||||||| ||| |||    
T  43014611 ataaggagaatgttaatcagtgcccttcggggcattgattaagcaccaaataaagtaagtttttgttaaaaagtaatgtaattactattactaaat-aaa 43014709  T
Q  319 agtgacagcttatatttccaagatagaaatttttatttatagattccttaac 370  Q
    |||||||  |||||||||||||| ||||| || |||||||| |||| |||||    
T  43014710 agtgacaatttatatttccaagacagaaaattatatttataaattctttaac 43014761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 263 - 379
Target Start/End: Original strand, 35322016 - 35322129
Alignment:
Q  263 agcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagat 362  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||  | ||| || |||||||||||    
T  35322016 agcaccaaaagaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga-agtttatatttctaag--acaaaattctatttatagat 35322112  T
Q  363 tccttaaccagtgcccc 379  Q
    |  ||||||| ||||||    
T  35322113 tttttaaccaatgcccc 35322129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 251 - 360
Target Start/End: Original strand, 36258672 - 36258782
Alignment:
Q  251 gggcattggttaagcaccaaatgaagtaagtttttattaaaa-agtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 349  Q
    |||||| |||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||  ||||||||| |||| ||||| |    
T  36258672 gggcatgggttaaacaccaaataaagtaagtttttattaaaaaagtaatgtaatgattacttaataaaaaatgacattttatatttctaagacagaaaat 36258771  T
Q  350 tttatttatag 360  Q
    | |||||||||    
T  36258772 tctatttatag 36258782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 248 - 375
Target Start/End: Original strand, 49710937 - 49711062
Alignment:
Q  248 ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaa 347  Q
    |||| |||||| ||||||||||||| || ||||||||||||||||| |||| ||||||||| || ||||||| | |||  ||||||||| |||| |||||    
T  49710937 ccggagcattgattaagcaccaaataaaataagtttttattaaaaattaatataattatta-tttataaaaaataacattttatatttctaagacagaaa 49711035  T
Q  348 tttttatttatagattccttaaccagtg 375  Q
     || ||||||||||||||||||||||||    
T  49711036 -ttctatttatagattccttaaccagtg 49711062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 225 - 359
Target Start/End: Original strand, 52992414 - 52992546
Alignment:
Q  225 taaggagaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 324  Q
    |||||||||||||||||||   ||| |  ||||||||||||||||||| |||||| ||||||  ||||| ||||||||||||||| ||||||||| |||     
T  52992414 taaggagaatgttaaccagtaaccccga-cattggttaagcaccaaataaagtaattttttaccaaaaaataatgtaattattac-taataaaaaatgat 52992511  T
Q  325 agcttatatttccaagatagaaatttttatttata 359  Q
    || |||||||| ||| | ||||| |||||||||||    
T  52992512 agtttatattttcaaaacagaaaattttatttata 52992546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 363
Target Start/End: Complemental strand, 47877393 - 47877284
Alignment:
Q  254 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 353  Q
    ||||||||| ||||||||||||  || ||||||||||||| || ||||||||||| |||||||||| ||| || ||||||||  || ||| ||| |||||    
T  47877393 cattggttatgcaccaaatgaaacaaatttttattaaaaaatagtgtaattattatttaataaaaaatgatagtttatatttttaaaatataaaatttta 47877294  T
Q  354 tttatagatt 363  Q
    ||||||||||    
T  47877293 tttatagatt 47877284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 372
Target Start/End: Original strand, 48338807 - 48338928
Alignment:
Q  251 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 349  Q
    ||||| |||||||||| |||||  |||||||||||||| |||||||  |||||| ||||||| || |||| | ||| ||||||||||||||||| |||||    
T  48338807 gggcaatggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacatcttatatttccaagata-aaatt 48338905  T
Q  350 tttatttatagattccttaacca 372  Q
    | |||||||| |||| |||||||    
T  48338906 tctatttataaattctttaacca 48338928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 321
Target Start/End: Original strand, 32961149 - 32961246
Alignment:
Q  225 taaggagaatgttaaccagggccccggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 321  Q
    |||||||||||||||  || |||||||||||||||||||||| | ||| || ||||| ||||||||||||||  |||||| |||| ||| ||||||||    
T  32961149 taaggagaatgttaattagtgccccggggcattggttaagcagctaaaagaggtaagattttattaaaaagtggtgtaataattagttagtaaaaagt 32961246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 339
Target Start/End: Original strand, 20585772 - 20585888
Alignment:
Q  225 taaggagaatgttaaccagggccccg-gggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg 322  Q
    ||||||||||||||||||| |||||  ||||||| |||||| | | ||| || ||||| ||||||||||||||  |||||| |||| ||||| ||||||     
T  20585772 taaggagaatgttaaccagtgcccctagggcattcgttaagtaactaaaagaggtaagattttattaaaaagtggtgtaataattagttaatcaaaagta 20585871  T
Q  323 acagcttatatttccaa 339  Q
    |||| ||||||||||||    
T  20585872 acagtttatatttccaa 20585888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 49419139 - 49419063
Alignment:
Q  282 ttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttat 358  Q
    |||||||||||||| |||||||||||| ||||||||||||||||  ||||||||| || | ||||| || |||||||    
T  49419139 ttttattaaaaagttatgtaattattagttaataaaaagtgacaatttatatttctaatacagaaaattctatttat 49419063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 55446750 - 55446839
Alignment:
Q  273 gaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattc 364  Q
    ||||||||||||||| |||||||  |||||| ||||||| || |||||| ||| ||||||||||||||| | |||||||||||| |||||||    
T  55446750 gaagtaagtttttat-aaaaagttgtgtaatcattactttattaaaagtaacatcttatatttccaagaca-aaatttttatttgtagattc 55446839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 38359097 - 38359168
Alignment:
Q  306 ttacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 378  Q
    |||||| || |||| | ||| |||||||||| |||||| |||||||||||||||||||||||||||| |||||    
T  38359097 ttactttatcaaaattaacatcttatatttctaagata-aaatttttatttatagattccttaaccattgccc 38359168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 4020116 - 4020222
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 373  Q
    |||||||||||||| ||||| |  |||||| |||||||||| |||| | |||  |||||||| ||||| | |||||| ||||| |||||||||||||||     
T  4020116 aagtaagtttttatgaaaaaattgtgtaataattacttaatcaaaattaacattttatattttcaagaca-aaatttctatttgtagattccttaaccat 4020214  T
Q  374 tgccccga 381  Q
    || |||||    
T  4020215 tgtcccga 4020222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 48252351 - 48252269
Alignment:
Q  289 aaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    ||||||| |||| ||||||| ||| | |||||| | | ||||||||| ||||||| || |||||||||||||||||||||||||    
T  48252351 aaaaagtgatgtcattattatttactcaaaagtcaaaacttatattttcaagata-aattttttatttatagattccttaacca 48252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 372
Target Start/End: Complemental strand, 635824 - 635703
Alignment:
Q  251 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 349  Q
    |||||||||||||||| |||||  |  |||||||||||| ||||||  |||||| |||| ||||| |||||| ||| ||||| | | ||||| | |||||    
T  635824 gggcattggttaagcatccaaaacatataagtttttattgaaaagttgtgtaatcattatttaatcaaaagtaacatcttatttattcaagaca-aaatt 635726  T
Q  350 tttatttatagattccttaacca 372  Q
    | ||||| |||||||||||||||    
T  635725 tctatttgtagattccttaacca 635703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 35990577 - 35990535
Alignment:
Q  385 ataataatttgagaaaataaaattattgaatgtaaccacatgt 427  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  35990577 ataataatttgagaaaataaaataactgaatgtaaccacatgt 35990535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 378
Target Start/End: Complemental strand, 28709661 - 28709558
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 373  Q
    |||||||||| ||| |||||||  | |||| |||| || || |||||| |||  |||||||| ||||||| |||||| ||||||||||||| |||||||     
T  28709661 aagtaagtttctataaaaaagttgtataatcattatttgatcaaaagtaacattttatattttcaagata-aaatttctatttatagattctttaaccat 28709563  T
Q  374 tgccc 378  Q
    |||||    
T  28709562 tgccc 28709558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 372
Target Start/End: Complemental strand, 1712019 - 1711922
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    |||||| |||||| |||||| || | ||||||||||||| | ||| || ||| ||||||||| ||||| | |||||| || || |||||||||||||||    
T  1712019 aagtaaatttttaataaaaaatagtataattattacttagtcaaatgtaacatcttatattttcaagaca-aaatttataattttagattccttaacca 1711922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 2379699 - 2379662
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattactt 311  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  2379699 aagtaagtttttattaaaaagtagtgtaattcttactt 2379662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 35060572 - 35060609
Alignment:
Q  389 taatttgagaaaataaaatt-attgaatgtaaccacat 425  Q
    |||||||||||||||||||| |||||||||||||||||    
T  35060572 taatttgagaaaataaaattgattgaatgtaaccacat 35060609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 49261822 - 49261902
Alignment:
Q  298 tgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcccc 379  Q
    |||||||||||||  || |||||| ||| ||||||||| ||||| | |||||| ||||| || ||| |||||||||||||||    
T  49261822 tgtaattattactctatcaaaagtaacatcttatatttacaagaca-aaatttctatttgtatatttcttaaccagtgcccc 49261902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 54801425 - 54801356
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagata 343  Q
    |||||||||||||| ||||| |  |||||||||||||| |  |||||| ||| ||||||||| |||||||    
T  54801425 aagtaagtttttatgaaaaaattgtgtaattattactttagcaaaagtaacatcttatattttcaagata 54801356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 42088735 - 42088767
Alignment:
Q  388 ataatttgagaaaataaaattattgaatgtaac 420  Q
    |||||||||||||||||||| ||||||||||||    
T  42088735 ataatttgagaaaataaaataattgaatgtaac 42088767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 228 - 381
Target Start/End: Original strand, 22035703 - 22035857
Alignment:
Q  228 ggagaatgttaaccagggcc-ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacag 326  Q
    ||||||||||||| |  ||| ||||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  22035703 ggagaatgttaactaatgcctccggggcatcggttaagttccaaatgaagtaagtttttattaaaaaataatgtaattattacttattaaaaagtgacag 22035802  T
Q  327 cttatatttccaagatagaaatttttatttatagattccttaaccagtgccccga 381  Q
     |||||||||||||| ||||| || ||||||||||||| ||||||||||||||||    
T  22035803 tttatatttccaagacagaaaattctatttatagattcattaaccagtgccccga 22035857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 225 - 380
Target Start/End: Complemental strand, 45907179 - 45907024
Alignment:
Q  225 taaggagaatgttaaccaggg-ccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 323  Q
    ||||||||||||||||||| | |||||||  ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45907179 taaggagaatgttaaccagtgtccccgggatattggttaagcataaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtga 45907080  T
Q  324 cagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 380  Q
    ||| |||||||| ||||| | |||  | |||||||||||||||||||| ||||||||    
T  45907079 cagtttatatttacaagaca-aaaaatctatttatagattccttaacccgtgccccg 45907024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 253 - 370
Target Start/End: Complemental strand, 36636124 - 36636008
Alignment:
Q  253 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 352  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||| ||||||||||||| || |    
T  36636124 gcattggttaagcaccaaataaagtaagtttttattaaaaaataatgtaattattacttaataaaaggtgaccgtttatatctccaagatagaaaattct 36636025  T
Q  353 atttatagattccttaac 370  Q
    ||||||| ||||||||||    
T  36636024 atttata-attccttaac 36636008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 258 - 375
Target Start/End: Original strand, 19689502 - 19689618
Alignment:
Q  258 ggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttattta 357  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||  |||||| || |||||||| ||||||||||| || ||||||    
T  19689502 ggttaaacaccaaatgaagtaagtttt-attaaaaagtaatgtaattattatttaatacgaagtgatagtttatatttacaagatagaaagttgtattta 19689600  T
Q  358 tagattccttaaccagtg 375  Q
    |||||||||||| |||||    
T  19689601 tagattccttaatcagtg 19689618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 227 - 370
Target Start/End: Complemental strand, 8117587 - 8117444
Alignment:
Q  227 aggagaatgttaaccaggg-ccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 325  Q
    ||||||||||||| ||| | |||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |||||||||| | |||    
T  8117587 aggagaatgttaatcagtgaccccggggcattggttaaacgctaaatgaagtaagtttttattaaaaagtaatgtaattattatttaataaaaaataaca 8117488  T
Q  326 gcttatatttccaagatagaaatttttatttatagattccttaac 370  Q
      |||||||| ||||| | ||| || |||||||||||||| ||||    
T  8117487 atttatattttcaagacataaa-ttctatttatagattccataac 8117444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 16861675 - 16861797
Alignment:
Q  254 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 353  Q
    |||| ||||||||||||| ||| |||| |||||||||||||||||||||||| || |||||||||| |||||| |||||||||||||| | ||| || ||    
T  16861675 catttgttaagcaccaaaagaaataaggttttattaaaaagtaatgtaattaatatttaataaaaaatgacagtttatatttccaagacataaa-ttcta 16861773  T
Q  354 tttatagattccttaaccagtgcc 377  Q
    |||||||||| ||||||| |||||    
T  16861774 tttatagatttcttaaccggtgcc 16861797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 41434673 - 41434813
Alignment:
Q  226 aaggagaatgttaaccagggc-cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 324  Q
    ||||||||||||||||| ||| ||||| ||||||||||| ||| |||   ||||| ||||||||||||| |||||||||||||| || ||||||||||||    
T  41434673 aaggagaatgttaaccaaggctcccggagcattggttaaacactaaa---agtaaatttttattaaaaaataatgtaattattatttgataaaaagtgac 41434769  T
Q  325 agcttatatttccaagatagaaatttttatttatagattccttaa 369  Q
    || ||||||||| |||| ||||| || ||||||||||||| ||||    
T  41434770 agtttatatttctaagacagaaa-ttatatttatagattctttaa 41434813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 229 - 341
Target Start/End: Original strand, 21798770 - 21798882
Alignment:
Q  229 gagaatgttaaccagggccccgggg-cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagc 327  Q
    ||||||||||| ||| ||| ||||| | |||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| |||| ||||||     
T  21798770 gagaatgttaaacagtgccgcgggggctttggttaagcaccaaaagaagtaa-tttttattaagaagtaatgtaattattacttaatgaaaaatgacagt 21798868  T
Q  328 ttatatttccaaga 341  Q
    ||||| ||||||||    
T  21798869 ttataattccaaga 21798882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 370
Target Start/End: Complemental strand, 16563584 - 16563469
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    ||||||||| ||| |||| || |||||||||||||||||||||||||||||||| ||| | |||| | | || |||||||||||||||| ||| || |||    
T  16563584 attggttaaacactaaataaattaagtttttattaaaaagtaatgtaattattatttactgaaaaataatagtttatatttccaagataaaaaattctat 16563485  T
Q  355 ttatagattccttaac 370  Q
    ||||| ||| ||||||    
T  16563484 ttatacatttcttaac 16563469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 370
Target Start/End: Original strand, 16602078 - 16602193
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    ||||||||| ||| |||| || |||||||||||||||||||||||||||||||| ||| | |||| | | || |||||||||||||||| ||| || |||    
T  16602078 attggttaaacactaaataaattaagtttttattaaaaagtaatgtaattattatttactgaaaaataatagtttatatttccaagataaaaaattctat 16602177  T
Q  355 ttatagattccttaac 370  Q
    ||||| ||| ||||||    
T  16602178 ttatacatttcttaac 16602193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 376
Target Start/End: Original strand, 19777886 - 19778037
Alignment:
Q  225 taaggagaatgttaaccagggccccggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 323  Q
    ||||||||||||||||||| || || ||| |||| ||||||| | ||| || ||||| |||||||||| ||| ||||||| |||| |||||||||| | |    
T  19777886 taaggagaatgttaaccagtgctccagggtattgattaagcagctaaaagaggtaagattttattaaagagtgatgtaataattagttaataaaaaataa 19777985  T
Q  324 cagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 376  Q
    ||| |||||||| ||||||| |  ||| || || | |||||||||||||||||    
T  19777986 cagtttatattttcaagata-atttttctacttttggattccttaaccagtgc 19778037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 341
Target Start/End: Complemental strand, 26203162 - 26203047
Alignment:
Q  227 aggagaatgttaaccagggccccggggcattggttaagc-accaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 325  Q
    ||||||||||||||||| ||||| ||||||||||||||| || ||| || ||||  ||||||||||||||  |||||| |||| ||| | |||||||||     
T  26203162 aggagaatgttaaccagtgcccccgggcattggttaagcaactaaaagaggtaaaattttattaaaaagtggtgtaataattagttagtcaaaagtgact 26203063  T
Q  326 gcttatatttccaaga 341  Q
    | ||| ||||||||||    
T  26203062 ggttagatttccaaga 26203047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 254 - 381
Target Start/End: Original strand, 37928297 - 37928424
Alignment:
Q  254 cattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 352  Q
    |||||||||| || |||||  |||||||||||||| |||||||  |||||| ||||||| || |||| | |||  |||||||| ||||||| |||||| |    
T  37928297 cattggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacattttatattttcaagata-aaatttat 37928395  T
Q  353 atttatagattccttaaccagtgccccga 381  Q
    |||||||||||| ||||||| ||| ||||    
T  37928396 atttatagattctttaaccattgctccga 37928424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 341
Target Start/End: Complemental strand, 7833889 - 7833772
Alignment:
Q  226 aaggagaatgttaaccagggccccg-gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 323  Q
    |||||||||||||||||  |||||| |||||||||||||||| |||||  ||||||| ||||||||||||||| || ||| |||| ||  | |||| | |    
T  7833889 aaggagaatgttaaccaatgccccgagggcattggttaagcagccaaaacaagtaagattttattaaaaagtagtgcaataattagttggtcaaaaataa 7833790  T
Q  324 cagcttatatttccaaga 341  Q
    ||| |||||||| |||||    
T  7833789 cagtttatattttcaaga 7833772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 31487802 - 31487702
Alignment:
Q  277 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 376  Q
    ||||||||||  ||||| |  |||||||||||||||||||||| | ||| ||||||||||||||||| |||||| |||| ||| ||| | |||||| |||    
T  31487802 taagtttttaagaaaaaattgtgtaattattacttaataaaaaataacatcttatatttccaagata-aaatttctattaataaattacctaaccaatgc 31487704  T
Q  377 cc 378  Q
    ||    
T  31487703 cc 31487702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 27364664 - 27364716
Alignment:
Q  328 ttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 380  Q
    |||||||||||||| | ||| || |||||||||||||||||||||||||||||    
T  27364664 ttatatttccaagacataaaattctatttatagattccttaaccagtgccccg 27364716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 381
Target Start/End: Complemental strand, 39786570 - 39786441
Alignment:
Q  252 ggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattt 350  Q
    ||||||||||||||| |||||  || ||| |||||  | ||||||| ||||||||||| ||||| |||||| | | ||||||||| ||||| | |  |||    
T  39786570 ggcattggttaagcaaccaaaacaaataacttttttattaaaagtagtgtaattattatttaatcaaaagttaaaacttatattttcaagaca-agtttt 39786472  T
Q  351 ttatttatagattccttaaccagtgccccga 381  Q
     ||||||||||||||||||||| || |||||    
T  39786471 ctatttatagattccttaaccattgtcccga 39786441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 3624339 - 3624254
Alignment:
Q  255 attggttaagcac-caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaa 339  Q
    ||||||||||||  |||| |||||||| ||||||||||||||  |||||| |||| || ||||||| | | |||||||||||||||    
T  3624339 attggttaagcattcaaaggaagtaagattttattaaaaagtggtgtaataattatttgataaaaaataaaagcttatatttccaa 3624254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 378
Target Start/End: Complemental strand, 47445500 - 47445348
Alignment:
Q  227 aggagaatgttaaccagggccccg-gggcattggttaagc-accaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 324  Q
    |||||||| ||||| || |||||  ||||||||||||||| |||| |  | |||||||||||| ||||| || | |||||||||||| || |||||| |     
T  47445500 aggagaatattaactagtgccccatgggcattggttaagcgaccagaacatgtaagtttttataaaaaaatagtttaattattacttcatcaaaagtaaa 47445401  T
Q  325 agcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 378  Q
    | ||||||||| ||| |   |||||| ||||||  |||||||||||||||||||    
T  47445400 aacttatattttcaa-agcaaaatttctatttaaggattccttaaccagtgccc 47445348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 378
Target Start/End: Original strand, 19677037 - 19677116
Alignment:
Q  298 tgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 378  Q
    |||||| |||||||||| |||||| ||| ||||||||| ||||| | |||||| ||||| | ||||||||||||| |||||    
T  19677037 tgtaatcattacttaatcaaaagtaacatcttatattttcaagaca-aaatttctatttgtcgattccttaaccaatgccc 19677116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 341
Target Start/End: Original strand, 16979936 - 16980027
Alignment:
Q  251 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaaga 341  Q
    |||||||||||||||| |||||  |||||| ||||||| |||||||  ||| |||||||||  || |||||| ||| ||||||||| |||||    
T  16979936 gggcattggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaacatcttatattttcaaga 16980027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 30775013 - 30774946
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaaga 341  Q
    |||||| |||||| ||||||| | |||||| ||||| | |||||| |||||||||||||||| |||||    
T  30775013 aagtaaatttttaataaaaagcagtgtaatcattacatgataaaatgtgacagcttatattttcaaga 30774946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 9483391 - 9483433
Alignment:
Q  385 ataataatttgagaaaataaaattattgaatgtaaccacatgt 427  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||    
T  9483391 ataataatttgagaaaatagaataattgaatgtaaccatatgt 9483433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 378
Target Start/End: Original strand, 16685729 - 16685854
Alignment:
Q  255 attggttaagca-ccaaatgaagtaagtttttatt-aaaaagtaatgtaattattacttaataaaa-agtgacagcttatatttccaagatagaaatttt 351  Q
    |||||||||||| |||||  ||||||||||||||| |||||||  |||||| ||||||| || ||| ||| ||| |||||||||| |||| | ||| ||     
T  16685729 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagaca-aaacttc 16685827  T
Q  352 tatttatagattccttaaccagtgccc 378  Q
    ||||  ||||||||||||||| |||||    
T  16685828 tattagtagattccttaaccaatgccc 16685854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 378
Target Start/End: Original strand, 17659965 - 17660090
Alignment:
Q  255 attggttaagca-ccaaatgaagtaagtttttatt-aaaaagtaatgtaattattacttaataaaa-agtgacagcttatatttccaagatagaaatttt 351  Q
    |||||||||||| |||||  ||||||||||||||| |||||||  |||||| ||||||| || ||| ||| ||| |||||||||| |||| | ||| ||     
T  17659965 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagaca-aaacttc 17660063  T
Q  352 tatttatagattccttaaccagtgccc 378  Q
    ||||  ||||||||||||||| |||||    
T  17660064 tattagtagattccttaaccaatgccc 17660090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 21454292 - 21454242
Alignment:
Q  385 ataataatttgagaaaataaaattattgaatgtaaccacatgtcttagtgt 435  Q
    |||||||||||| |||||  | ||||||||||||||||||||||| |||||    
T  21454292 ataataatttgaaaaaatggatttattgaatgtaaccacatgtctcagtgt 21454242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 32279742 - 32279705
Alignment:
Q  281 tttttattaaaaagtaatgtaattattacttaataaaaa 319  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  32279742 tttttattaaaaa-taatgtaattattacttaataaaaa 32279705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 378
Target Start/End: Original strand, 1359708 - 1359796
Alignment:
Q  289 aaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 378  Q
    |||||||||||||||  ||| ||| | |||||||| | ||||| ||||||||| | |||||| |||| || ||||||||||||| |||||    
T  1359708 aaaaagtaatgtaatcgttatttagtcaaaagtgagaccttatgtttccaagaca-aaatttctattcatggattccttaaccaatgccc 1359796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 228 - 380
Target Start/End: Original strand, 19889716 - 19889869
Alignment:
Q  228 ggagaatgttaaccagggccc-cggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacag 326  Q
    |||||||||||| ||| |||  |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||     
T  19889716 ggagaatgttaatcagtgccttcggggcattggttaagcatcaaatgaagtaagttttcattaaaaagtaatgtaattattacttaataaaaggtgacat 19889815  T
Q  327 cttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 380  Q
     |||||||||||| | | ||| || |||||||||||| ||||||||||||||||    
T  19889816 attatatttccaaaacataaaattctatttatagatttcttaaccagtgccccg 19889869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 229 - 365
Target Start/End: Complemental strand, 21646618 - 21646482
Alignment:
Q  229 gagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagc 327  Q
    ||||||||||||||| ||||  |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||      
T  21646618 gagaatgttaaccagtgccctaggggcattggttaaacaccaaatgaagtaagttttcattaaaaagtaatgtaattattacttaat-aaaagtgacact 21646520  T
Q  328 ttatatttccaagatagaaatttttatttatagattcc 365  Q
    |||||||||||||| ||||| || ||| ||||||||||    
T  21646519 ttatatttccaagacagaaaattctatgtatagattcc 21646482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 11610554 - 11610471
Alignment:
Q  226 aaggagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattatta 308  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  11610554 aaggagaatgttaaccagtgcccccggggcattggttaagcaccaaatgaagtaagttttcattaaaaagtaatgcaattatta 11610471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 37913123 - 37913024
Alignment:
Q  250 ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 349  Q
    |||| |||||||||||| |||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||| | |||||||| ||||||| |||||    
T  37913123 ggggtattggttaagcatcaaaagaagtaagtttttattaaaaattaatgtgattattacttgataaaaagtgacggtttatattttcaagataaaaatt 37913024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 18243857 - 18243787
Alignment:
Q  251 gggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 321  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  18243857 gggcattggttaagcaccaaataaagtaagtttttattaaaaagtaatataattattatttaataaaaagt 18243787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 347
Target Start/End: Original strand, 4141633 - 4141730
Alignment:
Q  249 cggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaa 347  Q
    |||||||||| ||||||| ||||| |||||| |||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||| |||| |||||    
T  4141633 cggggcattgattaagcatcaaataaagtaaatttttattaaaa-gtaatgtaattattactgaataaaaagtgacggtttatatttctaagagagaaa 4141730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 379
Target Start/End: Complemental strand, 40574288 - 40574134
Alignment:
Q  226 aaggagaatgttaaccagggccccg-gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 323  Q
    |||||||||| ||||||| |||||  ||||| |||||||||| |||||  |||||  |||| || |||||||  |||||||||||||  || |||||| |    
T  40574288 aaggagaatgctaaccagtgccccaagggcaatggttaagcatccaaaacaagtacattttcatgaaaaagttgtgtaattattactctatcaaaagtta 40574189  T
Q  324 cagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcccc 379  Q
    ||  |||||||||||||| | |||||| ||||| ||||||||||||||||||||||    
T  40574188 cattttatatttccaagaca-aaatttctatttgtagattccttaaccagtgcccc 40574134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 378
Target Start/End: Complemental strand, 1870638 - 1870486
Alignment:
Q  226 aaggagaatgttaaccagggccc-cggggcattggttaagcaccaaatg-aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 323  Q
    |||||||||| ||| ||| |||| |||||||||||||||||| ||||   |||||| ||||||| ||||| |  ||||||||||||||||| |||||| |    
T  1870638 aaggagaatgctaaacagtgccctcggggcattggttaagcaacaaaaacaagtaactttttataaaaaaatg-tgtaattattacttaatcaaaagtca 1870540  T
Q  324 cagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 378  Q
     ||||||||||| ||||| | || ||| ||||||||| ||||||||||| |||||    
T  1870539 aagcttatattttcaagaca-aattttctatttatagtttccttaaccattgccc 1870486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 281 - 374
Target Start/End: Complemental strand, 23788494 - 23788402
Alignment:
Q  281 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagt 374  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |  |||||||| ||| ||| ||| || ||||||||||||  |||||||||    
T  23788494 tttttattaaaaagtaatgtaattattacttaataaaaaatgataatttatattttcaaaatataaa-ttctatttatagattttttaaccagt 23788402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 255 - 370
Target Start/End: Original strand, 32345477 - 32345591
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    ||||||||| ||  |||| |||||||||||||| ||||| |||| ||||||||| |||||||||| |||||| ||||||||  |||| ||||| || |||    
T  32345477 attggttaaacaataaataaagtaagtttttatcaaaaa-taatataattattatttaataaaaaatgacagtttatatttttaagacagaaaattctat 32345575  T
Q  355 ttatagattccttaac 370  Q
    |||||  |||||||||    
T  32345576 ttataatttccttaac 32345591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 372
Target Start/End: Complemental strand, 13738510 - 13738393
Alignment:
Q  255 attggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 353  Q
    |||||||||||| |||||  |||||||||||||| ||||| |  |||||| ||||||| || | |||| ||| ||||||||| ||| | | |||||||||    
T  13738510 attggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactttatcagaagtaacatcttatattttcaaaaca-aaattttta 13738412  T
Q  354 tttatagattccttaacca 372  Q
    |||||||||||||||||||    
T  13738411 tttatagattccttaacca 13738393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 18243364 - 18243299
Alignment:
Q  310 ttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtg 375  Q
    |||||||||||||| || |||||||||||| | | ||| |||||||||||||||||||||||||||    
T  18243364 ttaataaaaagtgaaagtttatatttccaaaacaaaaaattttatttatagattccttaaccagtg 18243299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 380
Target Start/End: Complemental strand, 19995041 - 19994908
Alignment:
Q  247 cccggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagataga 345  Q
    |||||||||| |||||||||   ||| || |||||  ||||||||||||| ||||||| |||| ||| | |||||| |||| |||||||||||||||| |    
T  19995041 cccggggcatcggttaagcagttaaaagaggtaagcatttattaaaaagtgatgtaataattagttagtcaaaagtaacagtttatatttccaagata-a 19994943  T
Q  346 aatttttatttatagattccttaaccagtgccccg 380  Q
      ||| ||||| | ||||| |||||||||||||||    
T  19994942 tttttctatttttggattctttaaccagtgccccg 19994908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 27896481 - 27896543
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttc 336  Q
    ||||||||||| ||||||||||  ||||||||||||| ||| |||||| ||||||||||||||    
T  27896481 aagtaagttttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 27896543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 35501370 - 35501483
Alignment:
Q  227 aggagaatgttaaccagggccccggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 325  Q
    ||||||||||||| || | | |||||||||||||||||||   ||| |||||||| |||||||||||||| ||||||| |||| ||| | |||| | | |    
T  35501370 aggagaatgttaatcatgcctccggggcattggttaagcaggtaaaagaagtaagattttattaaaaagtgatgtaataattagttagtcaaaaataaaa 35501469  T
Q  326 gcttatatttccaa 339  Q
    | ||||||||||||    
T  35501470 gtttatatttccaa 35501483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 375
Target Start/End: Complemental strand, 23760706 - 23760588
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    ||||||||||||| | |  |||||| ||||  ||||||||||||||||||||||||| ||||||| | | || ||||||||  |||| | ||| || |||    
T  23760706 attggttaagcactacaaaaagtaaattttatttaaaaagtaatgtaattattacttgataaaaa-taagagtttatatttttaagacataaa-ttatat 23760609  T
Q  355 ttatagattccttaaccagtg 375  Q
    |||||||||| ||||||||||    
T  23760608 ttatagattcgttaaccagtg 23760588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 44013877 - 44013918
Alignment:
Q  386 taataatttgagaaaataaaattattgaatgtaaccacatgt 427  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  44013877 taataattttagaaaataaaattattgaatgtaatcacatgt 44013918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 370
Target Start/End: Original strand, 13717196 - 13717290
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaac 370  Q
    ||||||||||| || ||||||| |||||||||||||||| |||||| | |||  |||||||| ||||| | |||||| ||||| || ||||||||||    
T  13717196 aagtaagttttcatcaaaaagttatgtaattattacttattaaaaa-taacattttatattttcaagaca-aaatttctatttgtatattccttaac 13717290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 13835868 - 13835951
Alignment:
Q  288 taaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    |||||| || |||||||||||||||||||||||| | | ||||||||| ||||| || | ||| ||||||||| || ||||||||    
T  13835868 taaaaaatagtgtaattattacttaataaaaagtcaaaacttatattttcaagacag-attttctatttatagttttcttaacca 13835951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 339
Target Start/End: Complemental strand, 16498253 - 16498137
Alignment:
Q  225 taaggagaatgttaaccagggcc-ccggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg 322  Q
    |||||| |||||||||||| ||| || ||||||||||||||||   ||| || ||||| |||||||||||||| ||||||| |||| ||| | |||| |     
T  16498253 taaggacaatgttaaccagtgccaccagggcattggttaagcagttaaaagaggtaagattttattaaaaagtgatgtaataattagttagtcaaaatta 16498154  T
Q  323 acagcttatatttccaa 339  Q
    |||  ||||||||||||    
T  16498153 acaatttatatttccaa 16498137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 379
Target Start/End: Complemental strand, 5444573 - 5444483
Alignment:
Q  288 taaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcccc 379  Q
    ||||||||  |||| |||||||||||| |||||| | | ||||||||| ||||| | |||||||||||||||| ||| |||| || ||||||    
T  5444573 taaaaagttgtgtatttattacttaattaaaagtcaaaacttatattttcaagaca-aaatttttatttatagtttctttaatcattgcccc 5444483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 341
Target Start/End: Original strand, 8580506 - 8580597
Alignment:
Q  251 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaaga 341  Q
    |||||||||||||||| |||||  |||| |||||| || |||||    | ||||||||||||||| |||||| ||| |||||||||||||||    
T  8580506 gggcattggttaagcatccaaagtaagttagttttcatgaaaaatgtgtctaattattacttaatcaaaagtaacatcttatatttccaaga 8580597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 11610467 - 11610374
Alignment:
Q  282 ttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 376  Q
    |||| |||| || ||||| |||||||| ||||||||| |||||  ||||||||||| ||||| |||    |||||||||||||||||| ||||||    
T  11610467 tttttttaacaaataatgcaattattatttaataaaa-gtgactccttatatttccgagataaaaaagactatttatagattccttaatcagtgc 11610374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 3103573 - 3103532
Alignment:
Q  386 taataatttgagaaaataaaattattgaatgtaaccacatgt 427  Q
    ||||||||||||||||||| || ||||||||||||| |||||    
T  3103573 taataatttgagaaaataagataattgaatgtaaccgcatgt 3103532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 378
Target Start/End: Original strand, 4557589 - 4557693
Alignment:
Q  274 aagtaagtttttattaaaaa-gtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    |||||||||||||| ||||| ||   ||||| |||||| ||| |||| | ||  ||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  4557589 aagtaagtttttatgaaaaaagttgagtaataattactcaatcaaaaataacttcttatatttccaagata-aaatttctatttgtagattctttaacca 4557687  T
Q  373 gtgccc 378  Q
     |||||    
T  4557688 ttgccc 4557693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 44818465 - 44818428
Alignment:
Q  297 atgtaattattacttaataaaaagtgacagcttatatt 334  Q
    |||||||||||||||||||||||||||||  |||||||    
T  44818465 atgtaattattacttaataaaaagtgacaatttatatt 44818428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 19606364 - 19606296
Alignment:
Q  276 gtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatag 344  Q
    ||||| ||||||||||||||  |||||| |||| || || |||||| |||| |||||||||||| ||||    
T  19606364 gtaagattttattaaaaagtggtgtaataattagttcatcaaaagtaacagtttatatttccaaaatag 19606296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 41508544 - 41508584
Alignment:
Q  386 taataatttgagaaaataaaattattgaatgtaaccacatg 426  Q
    |||||||||||||||||| ||| |||||||||||| |||||    
T  41508544 taataatttgagaaaatagaataattgaatgtaactacatg 41508584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 247 - 379
Target Start/End: Complemental strand, 28462665 - 28462534
Alignment:
Q  247 cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaa 346  Q
    |||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| | ||    
T  28462665 cccgggacattggttaaacaccaaatgaagtaagtttttattaaaa-gtaatgtaattattacttaataaaaagtgatagtttatatttccaagacaaaa 28462567  T
Q  347 atttttatttatagattccttaaccagtgcccc 379  Q
    | || ||||||||||||| ||||||||||||||    
T  28462566 aattctatttatagattctttaaccagtgcccc 28462534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 223 - 366
Target Start/End: Complemental strand, 900381 - 900237
Alignment:
Q  223 aataaggagaatgttaaccagggc-cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 321  Q
    ||||||||||||||||||| | || ||| ||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |    
T  900381 aataaggagaatgttaaccggtgctcccagggcattggttaaacaccaaataaagtaagtttttattaaaaagtaatataattattacttaataaaaaat 900282  T
Q  322 gacagcttatatttccaagatagaaatttttatttatagattcct 366  Q
    ||||| ||| |||| ||||| ||||| || ||||||||| |||||    
T  900281 gacagtttaaattttcaagacagaaaattatatttatagtttcct 900237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 223 - 356
Target Start/End: Original strand, 37919365 - 37919499
Alignment:
Q  223 aataaggagaatgttaaccagggcc-ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 321  Q
    |||||||||||| |||||| | ||| |||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |    
T  37919365 aataaggagaatattaaccggtgcctccggagcattggttaagcaccgaataaagtaaatttttattaaaaagtaatgtaattattacttaataaaaaat 37919464  T
Q  322 gacagcttatatttccaagatagaaatttttattt 356  Q
    ||||| |||||||| ||| | | ||| ||||||||    
T  37919465 gacagtttatattttcaaaacaaaaaattttattt 37919499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 253 - 379
Target Start/End: Complemental strand, 39065650 - 39065527
Alignment:
Q  253 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 352  Q
    ||||||||||||||| ||| ||||||| ||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||  |||| ||||| || |    
T  39065650 gcattggttaagcactaaaagaagtaaatttttattaaaaaataatgtcattattacttgataaaaagtgacagtttatatttttaagacagaaa-ttct 39065552  T
Q  353 atttatagattccttaaccagtgcccc 379  Q
    |||||||||  ||||||||||||||||    
T  39065551 atttataga--ccttaaccagtgcccc 39065527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 39209477 - 39209356
Alignment:
Q  254 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 353  Q
    |||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||| ||||| ||||||||||| |||||||||||| | ||||| || ||    
T  39209477 cattggttaagcaccaaacgaagtaaatttttattaaaaagtgatgt-attattatttaat-aaaagtgacagtttatatttccaaaacagaaaattcta 39209380  T
Q  354 tttatagattccttaaccagtgcc 377  Q
    |||||| |||||||||| ||||||    
T  39209379 tttataaattccttaactagtgcc 39209356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 233 - 371
Target Start/End: Complemental strand, 39534275 - 39534137
Alignment:
Q  233 atgttaaccagggccccg-gggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttat 331  Q
    ||||||||||| |||||  |||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||  ||||||| ||||    
T  39534275 atgttaaccagtgcccccagggcgttagttaagcaccaaatgaggtaaatttttattaaaaagtaatgtaattattacttgataaagggtgacagtttat 39534176  T
Q  332 atttccaagatagaaatttttatttatagattccttaacc 371  Q
    |||| ||||| ||||| || || |||||||||| ||||||    
T  39534175 attttcaagacagaaa-ttctaattatagattctttaacc 39534137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 253 - 379
Target Start/End: Complemental strand, 41675787 - 41675662
Alignment:
Q  253 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 352  Q
    ||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||| || |||||||| ||| | ||||| || |    
T  41675787 gcattggttaagcaccaaaagaagtaaatttttattaaaaagaaatataattattacttgataaaaaatgatagtttatattttcaaaacagaaa-ttct 41675689  T
Q  353 atttatagattccttaaccagtgcccc 379  Q
    |||| |||||||||||| | |||||||    
T  41675688 atttgtagattccttaatcggtgcccc 41675662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 379
Target Start/End: Original strand, 29795503 - 29795627
Alignment:
Q  254 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 353  Q
    |||| ||||||||||||| ||| ||||||||| |||||||||||||||||||||| || |||||||||||||| ||||| ||  |||||| ||| || ||    
T  29795503 cattcgttaagcaccaaaagaattaagtttttgttaaaaagtaatgtaattattaattgataaaaagtgacagtttatagttttaagata-aaaattcta 29795601  T
Q  354 tttatagattccttaaccagtgcccc 379  Q
    ||| | ||||||||||||| ||||||    
T  29795602 tttttggattccttaaccaatgcccc 29795627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 253 - 372
Target Start/End: Original strand, 30924829 - 30924948
Alignment:
Q  253 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 352  Q
    |||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| || ||||||||| | ||||| ||||| || | ||| || |    
T  30924829 gcatcggttaagcaccaaaagaagtaagtttttgttagaaagtaatgtaattattacttgatgaaaagtgacggattatagttccatgacaaaaaattct 30924928  T
Q  353 atttatagattccttaacca 372  Q
    |||| | |||||||||||||    
T  30924929 atttttggattccttaacca 30924948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 335
Target Start/End: Original strand, 20821903 - 20821969
Alignment:
Q  269 aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatattt 335  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  20821903 aaataaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacaatttatattt 20821969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 254 - 372
Target Start/End: Original strand, 10029159 - 10029277
Alignment:
Q  254 cattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 352  Q
    ||||||||||||| |||||| |||||| ||||||| |||||||  | |||| ||||||| || |||||| ||| ||||||||||||||||| ||||||||    
T  10029159 cattggttaagcatccaaatcaagtaaatttttatgaaaaagttgtataatcattacttgatcaaaagtaacatcttatatttccaagata-aaattttt 10029257  T
Q  353 atttatagattccttaacca 372  Q
    |||| |||||| ||||||||    
T  10029258 atttgtagatttcttaacca 10029277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 378
Target Start/End: Original strand, 20542381 - 20542508
Alignment:
Q  251 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 349  Q
    |||||||||||||||| |||||   ||||||||||||  |||||    |||||| |||||||||| |||||| ||| |||||||||||||||  ||||||    
T  20542381 gggcattggttaagcatccaaaacgagtaagtttttaagaaaaaagtgtgtaatcattacttaatcaaaagtaacatcttatatttccaaga-cgaaatt 20542479  T
Q  350 tttatttatagattccttaaccagtgccc 378  Q
    | ||||| ||||||||||||||| |||||    
T  20542480 tctatttgtagattccttaaccaatgccc 20542508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 42654596 - 42654699
Alignment:
Q  265 caccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattc 364  Q
    |||||||| |||||||||||| || ||||| ||| |||||||||||||||||||| ||| || ||||||||| |||| | ||| ||||||| ||||||||    
T  42654596 caccaaataaagtaagtttttttttaaaagcaatataattattacttaataaaaaatgatagtttatatttctaagaca-aaaattttattgatagattc 42654694  T
Q  365 cttaa 369  Q
     ||||    
T  42654695 tttaa 42654699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 372
Target Start/End: Original strand, 41726914 - 41727011
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    |||||||||||||| |||||   ||||||| ||||||| ||||||| | |||  |||||||||||||| | |||||||||||| |||||||||||||||    
T  41726914 aagtaagtttttatgaaaaaactatgtaatcattactttataaaaaataacattttatatttccaagaca-aaatttttatttgtagattccttaacca 41727011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 349
Target Start/End: Original strand, 25347643 - 25347737
Alignment:
Q  253 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 349  Q
    |||||||||||| ||||||  |||||||||||| || ||||||||  ||||||||||||||| ||||||||||  ||||| |||||||||| |||||    
T  25347643 gcattggttaagaaccaaaaaaagtaagtttttgttgaaaagtaa-ataattattacttaatgaaaagtgaca-tttatagttccaagatataaatt 25347737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 38362320 - 38362264
Alignment:
Q  253 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattac 309  Q
    |||||||||||||| ||||| |||||| |||||||||||||| ||||||||||||||    
T  38362320 gcattggttaagcatcaaataaagtaaatttttattaaaaagcaatgtaattattac 38362264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 14110708 - 14110642
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaaga 341  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||||||||| | ||||||||| ||||    
T  14110708 aagtaaatttttattaaaaagttatgtaattattactt-ataaaaagtgacggtttatatttctaaga 14110642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 223 - 372
Target Start/End: Complemental strand, 35901563 - 35901414
Alignment:
Q  223 aataaggagaatgttaaccagggccccggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 321  Q
    |||| |||||||||||||| | |||   ||| |||||||||||| |||||  |||||||||||||| |||||||  || ||| |||| ||||| ||||||    
T  35901563 aatatggagaatgttaaccggtgccaaagggtattggttaagcatccaaaacaagtaagtttttatgaaaaagttgtgcaatcattatttaattaaaagt 35901464  T
Q  322 gacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
     ||| |||| |||| ||| | | |||||| ||||| |||||||||||||||    
T  35901463 aacatcttacattttcaaaaca-aaatttctatttgtagattccttaacca 35901414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 13873718 - 13873818
Alignment:
Q  277 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 376  Q
    ||||||||||| ||||| | ||| ||| |||||||||| |||| | ||| |||||||||| |||| | ||| ||||||||||||||||||||| || |||    
T  13873718 taagtttttatgaaaaaattatgcaatcattacttaattaaaaataacatcttatatttctaagaca-aaaattttatttatagattccttaatcattgc 13873816  T
Q  377 cc 378  Q
    ||    
T  13873817 cc 13873818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 343
Target Start/End: Original strand, 38388490 - 38388610
Alignment:
Q  226 aaggagaatgttaaccagggcccc--ggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg 322  Q
    ||||| |||||||||||| ||||   ||||||| ||||||||| | ||| || ||||| |||||||||||||| ||||||| |||| ||| | ||||||     
T  38388490 aaggacaatgttaaccagtgccctcgggggcatcggttaagcagctaaaagaggtaagattttattaaaaagtgatgtaataattagttagtcaaaagta 38388589  T
Q  323 acagcttatatttccaagata 343  Q
    | || ||||||||||||||||    
T  38388590 atagtttatatttccaagata 38388610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 44649030 - 44648927
Alignment:
Q  277 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 376  Q
    |||||||| || |||||||  |||||| ||||||| || |||||| |||  |||||||| ||||| | |||||| ||||| ||||||||||||||| |||    
T  44649030 taagttttcatgaaaaagttgtgtaatcattactttatcaaaagtaacattttatattttcaagaca-aaatttctatttgtagattccttaaccattgc 44648932  T
Q  377 cccga 381  Q
    |||||    
T  44648931 cccga 44648927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 6270244 - 6270139
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 373  Q
    ||||||||||| || |||||||  |||||| ||||||| || |||| | ||| ||||||||||||||| | ||||||||| || ||||||||||||| |     
T  6270244 aagtaagttttcataaaaaagttgtgtaatcattactttatcaaaa-taacaccttatatttccaagaca-aaatttttaattgtagattccttaactat 6270147  T
Q  374 tgccccga 381  Q
    ||||||||    
T  6270146 tgccccga 6270139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 3347582 - 3347509
Alignment:
Q  298 tgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    |||||||||||||| || |||||| ||| ||||||||| ||||| | |||||||||||| |||||| ||||||||    
T  3347582 tgtaattattactttattaaaagtaacatcttatattttcaagaca-aaatttttatttgtagatttcttaacca 3347509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 378
Target Start/End: Original strand, 40607324 - 40607419
Alignment:
Q  281 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 378  Q
    |||||||||||| ||| ||||||||||||||||| |||||| | | |||||||||  |||||| || ||| |||||||| ||| |||||||| |||||    
T  40607324 tttttattaaaa-gtagtgtaattattacttaatcaaaagtcaaaacttatatttttaagata-aattttctatttataaatttcttaaccattgccc 40607419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 1988807 - 1988865
Alignment:
Q  283 tttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaaga 341  Q
    ||||||||||||||||||||| |||| ||| | |||||| |||| ||||||||| ||||    
T  1988807 tttattaaaaagtaatgtaataattagttagtcaaaagtaacagtttatatttcgaaga 1988865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 18131188 - 18131249
Alignment:
Q  253 gcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaat 314  Q
    |||||||||||||| |||||  |||||| |||||||||||| ||| |||||||||||||||||    
T  18131188 gcattggttaagcaaccaaaacaagtaactttttattaaaa-gtagtgtaattattacttaat 18131249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 372
Target Start/End: Complemental strand, 18200776 - 18200679
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    ||||||| |||||| ||||| |  |||||| |||||||||| |||||| |||  ||||||||  |||| | |||||||||||| |||||| ||||||||    
T  18200776 aagtaagcttttatgaaaaaattgtgtaatcattacttaatcaaaagtaacatgttatatttttaagaca-aaatttttatttgtagatttcttaacca 18200679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 341
Target Start/End: Complemental strand, 22266366 - 22266251
Alignment:
Q  226 aaggagaatgttaaccag-ggccccggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 323  Q
    |||||||||||||||||| | ||||||||||||| |||||||   ||| || ||||| ||||||||||||||   ||||| |||| ||| |||||||| |    
T  22266366 aaggagaatgttaaccagtgcccccggggcattgcttaagcagttaaaagaggtaagattttattaaaaagt--ggtaataattagttagtaaaaagtaa 22266269  T
Q  324 cagcttatatttccaaga 341  Q
    ||| |||| ||| |||||    
T  22266268 cagtttatgttttcaaga 22266251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 1551461 - 1551534
Alignment:
Q  223 aataaggagaatgttaaccagggccccggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagt 295  Q
    ||||||||| ||||||||||  | |||||||||||| |||||||  |||| || ||||| ||||||||||||||    
T  1551461 aataaggaggatgttaaccaatgtcccggggcattgattaagcagtcaaaagaggtaagattttattaaaaagt 1551534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 426
Target Start/End: Complemental strand, 10170438 - 10170397
Alignment:
Q  385 ataataatttgagaaaataaaattattgaatgtaaccacatg 426  Q
    ||||||||||||||||||||| | |||||||||||| |||||    
T  10170438 ataataatttgagaaaataaattaattgaatgtaactacatg 10170397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 422
Target Start/End: Complemental strand, 33697193 - 33697156
Alignment:
Q  385 ataataatttgagaaaataaaattattgaatgtaacca 422  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  33697193 ataataatttgagaaaataaaataattgaatataacca 33697156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 40489871 - 40489970
Alignment:
Q  277 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 376  Q
    ||||||||||| ||||||| ||||||| ||||||| || || ||| |||  |||||||| ||||  | ||||||||| || ||||||||||||||| |||    
T  40489871 taagtttttatgaaaaagttatgtaatcattactttatcaatagtaacattttatatttacaaggca-aaattttta-ttgtagattccttaaccattgc 40489968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 378
Target Start/End: Original strand, 11150917 - 11151043
Alignment:
Q  251 gggcattggttaagcac-caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 349  Q
    ||||||||||||||||  ||||  |||||||||||||  ||||| |  |||||| |||| || || |||||| ||| |||||||||| |||| | |||||    
T  11150917 gggcattggttaagcattcaaaataagtaagtttttaaaaaaaattg-tgtaatcattatttgatcaaaagtaacatcttatatttctaagacaaaaatt 11151015  T
Q  350 tttatttatagattccttaaccagtgccc 378  Q
    || |||| |||||||||||| || |||||    
T  11151016 tt-atttgtagattccttaatcattgccc 11151043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 372
Target Start/End: Complemental strand, 17720322 - 17720176
Alignment:
Q  228 ggagaatgttaaccagggccccggggcattggtta--agca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 324  Q
    |||||||||||||||| ||||  ||||||||||||  |||| |||||  ||  ||||||| || |||||||  |||||| ||||| | || |||| | ||    
T  17720322 ggagaatgttaaccagtgcccaagggcattggttataagcatccaaaacaaacaagttttcatgaaaaagttgtgtaatcattacatgatcaaaaataac 17720223  T
Q  325 agcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    | ||||||||| ||||| | | |||| ||||||||||||| |||||||    
T  17720222 atcttatattttcaagaaa-atatttctatttatagattctttaacca 17720176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 227 - 377
Target Start/End: Complemental strand, 31884603 - 31884453
Alignment:
Q  227 aggagaatgttaaccagggccccgg-ggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 325  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| || ||||||| || ||    
T  31884603 aggagaatgttaaccattgccccggaggcattggttaagcaccaaaaaaagtaagtttttattaaaaagtaatgtaattattatttgataaaaaatgtca 31884504  T
Q  326 gcttatatttccaagatagaaatttttatttatagattccttaaccagtgcc 377  Q
    | |||||||||||||||||||| || |||||||||||| |||||| ||||||    
T  31884503 gtttatatttccaagatagaaa-ttctatttatagatttcttaacaagtgcc 31884453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 227 - 372
Target Start/End: Complemental strand, 26855969 - 26855824
Alignment:
Q  227 aggagaatgttaaccagggcc-ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 325  Q
    ||||||||||||||| | ||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||    
T  26855969 aggagaatgttaaccggtgcctccggggcattggttaagcaccaaataaagtaaatttttattaaaa-gtaatgtaattattacttgataaaaagtgaca 26855871  T
Q  326 gcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    | |||||||||||||| | ||| || ||||||||||||| |||||||    
T  26855870 gattatatttccaagacaaaaaattctatttatagattctttaacca 26855824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 255 - 376
Target Start/End: Complemental strand, 33827939 - 33827818
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    |||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||| ||||| ||||||    
T  33827939 attggttaagaaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagtgatcgtttatatttccaagacagaaaattttat 33827840  T
Q  355 ttatagattccttaaccagtgc 376  Q
    ||||||||||||||||||||||    
T  33827839 ttatagattccttaaccagtgc 33827818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 255 - 376
Target Start/End: Original strand, 33840026 - 33840147
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    |||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||| ||||| ||||||    
T  33840026 attggttaagaaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagtgatcgtttatatttccaagacagaaaattttat 33840125  T
Q  355 ttatagattccttaaccagtgc 376  Q
    ||||||||||||||||||||||    
T  33840126 ttatagattccttaaccagtgc 33840147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 224 - 357
Target Start/End: Complemental strand, 44109217 - 44109083
Alignment:
Q  224 ataaggagaatgttaaccagggcccc--ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 321  Q
    ||||||| |||||||||||| |||||  ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44109217 ataaggataatgttaaccagtgcccctcggggcattgattaaccac-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagg 44109119  T
Q  322 gacagcttatatttccaagatagaaatttttattta 357  Q
    ||||| |||||||||||||||||||| || ||||||    
T  44109118 gacagtttatatttccaagatagaaaattctattta 44109083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 223 - 349
Target Start/End: Complemental strand, 50127495 - 50127368
Alignment:
Q  223 aataaggagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 321  Q
    |||| |||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  ||||||| |    
T  50127495 aatatggagaatgttaaccagtgcccccggggcattggttaagtaccaaaagaagtaagtttttattaaaaagtaatgtaattattactcgataaaaaat 50127396  T
Q  322 gacagcttatatttccaagatagaaatt 349  Q
    ||||| |||||||||||||| |||||||    
T  50127395 gacagtttatatttccaagacagaaatt 50127368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 255 - 374
Target Start/End: Complemental strand, 50468921 - 50468802
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    |||||||||| | ||| | |||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| ||||||    
T  50468921 attggttaagtatcaagtaaagtaaatttttattaaaaagtaatgtaattattacttaataaaaaatgacaggttatatttctaagatagaaaattttat 50468822  T
Q  355 ttatagattccttaaccagt 374  Q
    ||||||||||||||||||||    
T  50468821 ttatagattccttaaccagt 50468802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 252 - 378
Target Start/End: Complemental strand, 40391335 - 40391209
Alignment:
Q  252 ggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttt 351  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||| ||     
T  40391335 ggcattggttaagcaccaaatgaagtgagtttttatcaaaaagtaatgtaattattacttgataaaaagtgacagtttatattttcaagacagaaaattc 40391236  T
Q  352 tatttatagattccttaaccagtgccc 378  Q
     ||||||||||| ||||| ||||||||    
T  40391235 gatttatagatttcttaatcagtgccc 40391209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 223 - 374
Target Start/End: Complemental strand, 15419798 - 15419646
Alignment:
Q  223 aataaggagaatgttaaccagggcc-ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 321  Q
    |||||||||||| |||||| | | | |||| ||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  15419798 aataaggagaatattaacccgtgtctccggagcattggttaaacaccaaataaagtaaatttttattaaaaagtaatataattattacttaataaaaagt 15419699  T
Q  322 gacagcttatatttccaagatagaaatttttatttatagattccttaaccagt 374  Q
     |||| |||||||||||| | | ||| || ||||||||||||| |||||||||    
T  15419698 aacagtttatatttccaatacaaaaaattctatttatagattcattaaccagt 15419646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 230 - 375
Target Start/End: Complemental strand, 30627755 - 30627610
Alignment:
Q  230 agaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagttttta-ttaaaaagtaatgtaattattacttaataaaaagtgacagct 328  Q
    |||||||||||| | |||| || ||||||||||||||||||  ||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||| |    
T  30627755 agaatgttaaccggtgcccaggtgcattggttaagcaccaagagaagtaaatttttaattaaaaagtaatgtaatcattactttataaaaagtgacaggt 30627656  T
Q  329 tatatttccaagatagaaatttttatttatagattccttaaccagtg 375  Q
    ||||||||||||| | ||| || |||||||||||||||||| |||||    
T  30627655 tatatttccaagacataaa-ttctatttatagattccttaatcagtg 30627610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 228 - 380
Target Start/End: Complemental strand, 48283023 - 48282881
Alignment:
Q  228 ggagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacag 326  Q
    |||||||||||||||| ||||| ||||||||||||||||||||          ||||||| |||||||||||||||||||||| | ||||||||||||||    
T  48283023 ggagaatgttaaccagtgcccccggggcattggttaagcacca----------gtttttactaaaaagtaatgtaattattacctgataaaaagtgacag 48282934  T
Q  327 cttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 380  Q
     |||||||| ||||| ||||| || |||||||||||||||||||||||||||||    
T  48282933 attatattttcaagacagaaa-ttctatttatagattccttaaccagtgccccg 48282881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 16963716 - 16963639
Alignment:
Q  228 ggagaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaatta 305  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16963716 ggagaatgttaaccagtgccccggagcattggttaagcaccaaatgaagtaaatttttattaaaaagtaatgtaatta 16963639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 226 - 320
Target Start/End: Original strand, 27742523 - 27742617
Alignment:
Q  226 aaggagaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaag 320  Q
    |||||||||||||||  | |  || |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27742523 aaggagaatgttaactggtgttcccgggcattggttaagcaacaaaagaagtaattttttattaaaaagtaatgtaattattacttaataaaaag 27742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 376
Target Start/End: Original strand, 19066858 - 19066979
Alignment:
Q  254 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 353  Q
    |||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||  ||||||||||||  ||||||||| |||| | | | || ||    
T  19066858 cattggttaagcgccaaataaagtaaatttttattaaaaagtattgtaattattacttggtaaaaagtgacaatttatatttctaagaca-acaattcta 19066956  T
Q  354 tttatagattccttaaccagtgc 376  Q
    |||||||||| |||||| |||||    
T  19066957 tttatagatttcttaactagtgc 19066979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 376
Target Start/End: Original strand, 19114748 - 19114869
Alignment:
Q  254 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 353  Q
    |||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||  ||||||||||||  ||||||||| |||| | | | || ||    
T  19114748 cattggttaagcgccaaataaagtaaatttttattaaaaagtattgtaattattacttggtaaaaagtgacaatttatatttctaagaca-acaattcta 19114846  T
Q  354 tttatagattccttaaccagtgc 376  Q
    |||||||||| |||||| |||||    
T  19114847 tttatagatttcttaactagtgc 19114869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 248 - 376
Target Start/End: Complemental strand, 13534618 - 13534491
Alignment:
Q  248 ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaa 347  Q
    |||| ||||||||||||| |||||| |||||| |||||||||||||||||||||||||||| ||  ||||||  ||||  ||||||||  |||| || ||    
T  13534618 ccggagcattggttaagcgccaaataaagtaaatttttattaaaaagtaatgtaattattatttggtaaaaaaagacaatttatatttttaagagagcaa 13534519  T
Q  348 tttttatttatagattccttaaccagtgc 376  Q
     || |||| ||||||| ||||||||||||    
T  13534518 -ttctattaatagatttcttaaccagtgc 13534491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 370
Target Start/End: Complemental strand, 13969242 - 13969099
Alignment:
Q  228 ggagaatgttaaccagggccccggg-gcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 325  Q
    |||||||||||||||| |||||  | | |||||||||||| |||||  |||||||||||||| ||||| |  |||||| |||||||||| |||||| |||    
T  13969242 ggagaatgttaaccagtgccccaagagtattggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagtaaca 13969143  T
Q  326 gcttatatttccaagatagaaatttttatttatagattccttaac 370  Q
      |||||||| ||||| | |||||| ||||| |||||||||||||    
T  13969142 ttttatattttcaagaca-aaatttctatttgtagattccttaac 13969099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 46295963 - 46295860
Alignment:
Q  277 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 376  Q
    ||||||||||| |||||||  ||| || ||||||| || |||||| |||  |||||||| ||||||| |||||||||||| ||||||||||||||| |||    
T  46295963 taagtttttatgaaaaagttgtgtcatgattacttgatcaaaagtaacattttatattttcaagata-aaatttttatttgtagattccttaaccattgc 46295865  T
Q  377 cccga 381  Q
    |||||    
T  46295864 cccga 46295860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 288 - 376
Target Start/End: Complemental strand, 20471413 - 20471326
Alignment:
Q  288 taaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 376  Q
    ||||||||||||||||||||  || |||||||||||||| ||||||||| |||| | | | || |||||||||||| ||||||||||||    
T  20471413 taaaaagtaatgtaattattttttgataaaaagtgacagtttatatttctaagaca-acaattatatttatagatttcttaaccagtgc 20471326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 20560124 - 20560211
Alignment:
Q  288 taaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 376  Q
    ||||||||||||||||||||  || |||||||||||||| ||||||||| |||| | | | || |||||||||||| ||||||||||||    
T  20560124 taaaaagtaatgtaattattttttgataaaaagtgacagtttatatttctaagaca-acaattatatttatagatttcttaaccagtgc 20560211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 378
Target Start/End: Complemental strand, 8001818 - 8001739
Alignment:
Q  298 tgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 378  Q
    |||||| ||||||| || |||||| ||| ||||||||| ||||||| |||||| ||||| ||||||||||||||| |||||    
T  8001818 tgtaatcattactttatcaaaagtaacatcttatattttcaagata-aaatttctatttctagattccttaaccattgccc 8001739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 18910525 - 18910397
Alignment:
Q  249 cggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg---acagcttatatttccaagataga 345  Q
    |||| ||||| |||| ||||||| ||| ||| ||||||||||||||||||||||| |||| ||| ||||||||    |||| ||||||||  || ||| |    
T  18910525 cgggacattgattaaacaccaaaagaaataaatttttattaaaaagtaatgtaatcattattta-taaaaagtactaacagtttatatttttaaaata-a 18910428  T
Q  346 aatttttatttatagattccttaaccagtgc 376  Q
    ||||| ||||||||||||| |||| ||||||    
T  18910427 aatttctatttatagattctttaatcagtgc 18910397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 378
Target Start/End: Original strand, 39238849 - 39238952
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 373  Q
    ||||||||||||| |||||| || |||||| ||||||| || ||| || ||| |||| ||||  |||| | |||||||||||||| |||||||||||||     
T  39238849 aagtaagtttttaataaaaaatagtgtaatcattacttgatcaaatgtaacaacttacatttttaagaga-aaatttttatttatggattccttaaccaa 39238947  T
Q  374 tgccc 378  Q
    |||||    
T  39238948 tgccc 39238952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 11802935 - 11802991
Alignment:
Q  283 tttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaa 339  Q
    ||||||||||||||||||||| |||| ||| | |||||| |||| ||||||||||||    
T  11802935 tttattaaaaagtaatgtaataattagttagtcaaaagtaacagtttatatttccaa 11802991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 370
Target Start/End: Original strand, 27688497 - 27688592
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaac 370  Q
    ||||||||||| || ||||| |  |||||| ||||||| || |||||| ||| ||||||||| ||| ||| ||||||| |||| |||||||||||||    
T  27688497 aagtaagttttcatgaaaaacttgtgtaatcattactttatcaaaagtaacatcttatattttcaatata-aaattttaatttgtagattccttaac 27688592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 369
Target Start/End: Original strand, 27517 - 27610
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaa 369  Q
    |||||| ||||||| |||||||| ||||||||||||||||| |||||| | | |||||||||  |||| | || ||||||||||||| | ||||||    
T  27517 aagtaactttttat-aaaaagtagtgtaattattacttaatcaaaagtcaaaacttatattttaaagaca-aattttttatttatagttcccttaa 27610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 20359355 - 20359312
Alignment:
Q  253 gcattggttaagcaccaaatgaagtaagtttttattaaaaagta 296  Q
    ||||||||||||| | |||| |||||||||||||||||||||||    
T  20359355 gcattggttaagcgctaaataaagtaagtttttattaaaaagta 20359312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 20551615 - 20551658
Alignment:
Q  253 gcattggttaagcaccaaatgaagtaagtttttattaaaaagta 296  Q
    ||||||||||||| | |||| |||||||||||||||||||||||    
T  20551615 gcattggttaagcgctaaataaagtaagtttttattaaaaagta 20551658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 36160536 - 36160623
Alignment:
Q  225 taaggagaatgttaaccagggccccggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattactt 311  Q
    ||||||||||| ||||||  |||| || ||||||||||||||   |||  ||||||||| ||| ||||||||| ||||||||||||||    
T  36160536 taaggagaatgctaaccaatgccctggagcattggttaagcaattaaaacaagtaagttcttaataaaaagtagtgtaattattactt 36160623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 372
Target Start/End: Original strand, 11449078 - 11449175
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    |||||||||||||| ||||||| ||||||||||||| | || |||| | |||  ||||||||  |||| | || ||||||||| ||||||| |||||||    
T  11449078 aagtaagtttttatgaaaaagttatgtaattattacatgatcaaaattaacatattatatttttaagaca-aattttttatttgtagattctttaacca 11449175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 335
Target Start/End: Original strand, 38597473 - 38597559
Alignment:
Q  250 ggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatattt 335  Q
    ||||||||||||||| | |||||  ||||||||||| || |||||||  | |||| |||||||||| |||||||| | |||||||||    
T  38597473 ggggcattggttaagtatccaaaacaagtaagttttaataaaaaagttgtctaatcattacttaatcaaaagtgatatcttatattt 38597559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 43328474 - 43328516
Alignment:
Q  385 ataataatttgagaaaataaaattattgaatgtaaccacatgt 427  Q
    |||||||||||||||||| |||| ||| |||||||||||||||    
T  43328474 ataataatttgagaaaatgaaataatttaatgtaaccacatgt 43328516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 43609870 - 43609828
Alignment:
Q  385 ataataatttgagaaaataaaattattgaatgtaaccacatgt 427  Q
    |||||||||||||||||||| || ||||||||||| |||||||    
T  43609870 ataataatttgagaaaataacataattgaatgtaatcacatgt 43609828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 20471775 - 20471726
Alignment:
Q  247 cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagta 296  Q
    ||||| ||||||||||||| | |||| |||||| ||||||||||||||||    
T  20471775 cccggagcattggttaagcgctaaataaagtaaatttttattaaaaagta 20471726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 20559762 - 20559811
Alignment:
Q  247 cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagta 296  Q
    ||||| ||||||||||||| | |||| |||||| ||||||||||||||||    
T  20559762 cccggagcattggttaagcgctaaataaagtaaatttttattaaaaagta 20559811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 33148917 - 33148954
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattactt 311  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  33148917 aagtaagtttttaataaaaagtagtgtaattattactt 33148954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 368
Target Start/End: Complemental strand, 10226555 - 10226464
Alignment:
Q  276 gtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattcctta 368  Q
    ||||||||| || |||||||  |||||| ||||||| || |||| | ||| ||||||||| ||||| | |||||| ||||| |||||||||||    
T  10226555 gtaagttttcatgaaaaagttgtgtaatcattactttatcaaaattaacatcttatattttcaagaca-aaatttctatttgtagattcctta 10226464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 378
Target Start/End: Original strand, 26829510 - 26829613
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 373  Q
    |||||| |||| || |||||||  |||||| ||||||| || |||||| ||| ||||||||||||||| | |||||| || || || ||| ||||||||     
T  26829510 aagtaaattttcatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatatttccaagaca-aaatttctaattgtaaatttcttaaccat 26829608  T
Q  374 tgccc 378  Q
    |||||    
T  26829609 tgccc 26829613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 226 - 381
Target Start/End: Original strand, 38771 - 38925
Alignment:
Q  226 aaggagaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 325  Q
    |||||||||||||||||| || | || |||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  38771 aaggagaatgttaaccagtgctctggagcattggttaagaatcaaataaaataagtttttattaaaaagtaatgtaattattacttgataaaaaatgaca 38870  T
Q  326 gcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccga 381  Q
    | |||||||||||||||| ||| || ||||||||||||  ||||||||| ||||||    
T  38871 gtttatatttccaagatataaa-ttctatttatagattttttaaccagtaccccga 38925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 223 - 375
Target Start/End: Original strand, 31647687 - 31647839
Alignment:
Q  223 aataaggagaatgttaaccagggccccgg-ggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 321  Q
    ||||||||||||||||||| | ||||| | || ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  31647687 aataaggagaatgttaaccggtgcccccgaggtattggttaagcaccaaaagaaataagtttttattaaaaagtaatgtaattattacttgataaaaagt 31647786  T
Q  322 gacagcttatatttccaagatagaaatttttatttatagattccttaaccagtg 375  Q
    || || ||||||||| |||| ||||| || ||||||||||||| |||| |||||    
T  31647787 gatagtttatatttctaagacagaaa-ttctatttatagattctttaatcagtg 31647839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 228 - 364
Target Start/End: Complemental strand, 38320261 - 38320124
Alignment:
Q  228 ggagaatgttaaccagggccccgggg-cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacag 326  Q
    |||||||||||||||| || || | | |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38320261 ggagaatgttaaccagtgcgccagagacattagttaagcatcaaataaagtaagtttttattaaaaagtaatgtaattattacttaataagaagtgacag 38320162  T
Q  327 cttatatttccaagatagaaatttttatttatagattc 364  Q
     |||||||||||||| ||||| || |||||||||||||    
T  38320161 tttatatttccaagacagaaaattctatttatagattc 38320124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 255 - 381
Target Start/End: Complemental strand, 19147262 - 19147137
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    |||| |||||||||||| |||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||| || ||     
T  19147262 attgattaagcaccaaaagaagtaagtttttattaataagtaatgtaattattatttgataaaaagtgacagtttatattttcaagacagaaa-ttctac 19147164  T
Q  355 ttatagattccttaaccagtgccccga 381  Q
    ||||||||| ||||||||||| |||||    
T  19147163 ttatagatttcttaaccagtgtcccga 19147137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 255 - 376
Target Start/End: Original strand, 47397604 - 47397724
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    ||||||||||||||||| | ||||| |||||||| ||||||||| ||||||||| || |||||||||||||| ||||||||| || ||||||| || |||    
T  47397604 attggttaagcaccaaaagtagtaaatttttatttaaaagtaatataattattatttgataaaaagtgacagtttatatttctaaaatagaaa-ttctat 47397702  T
Q  355 ttatagattccttaaccagtgc 376  Q
    ||||||||||||||||||||||    
T  47397703 ttatagattccttaaccagtgc 47397724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 270 - 374
Target Start/End: Complemental strand, 31242051 - 31241947
Alignment:
Q  270 aatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaa 369  Q
    ||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| || ||||||||||||||||||    
T  31242051 aatgaggtaaatttttattaaaaagtaatgtaattattatttaataaaaagtgaccgtttatattttcaagacagaaaattctatttatagattccttaa 31241952  T
Q  370 ccagt 374  Q
    |||||    
T  31241951 ccagt 31241947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 20542792 - 20542717
Alignment:
Q  228 ggagaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaat 303  Q
    ||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  20542792 ggagaatgttaactagtgccccggggcattggttaagcaccaaaagaattaagtttttattaaaaagtaatataat 20542717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 281 - 377
Target Start/End: Complemental strand, 51100114 - 51100019
Alignment:
Q  281 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcc 377  Q
    |||||||||||||||| ||||||||||||||||| |||||| | | ||||||||| ||| ||| || ||| ||||||||||||||||||||| ||||    
T  51100114 tttttattaaaaagtagtgtaattattacttaatcaaaagttaaaacttatattttcaaaata-aattttctatttatagattccttaaccattgcc 51100019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 38319606 - 38319533
Alignment:
Q  304 tattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcc 377  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||| || ||||||||||||||||||||| ||||    
T  38319606 tattacttaataaaaagtgacagtttatattttcaaaacagaaaattctatttatagattccttaaccaatgcc 38319533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 227 - 341
Target Start/End: Complemental strand, 50086776 - 50086660
Alignment:
Q  227 aggagaatgttaaccagggcccc-ggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 324  Q
    ||||||||||||||||| ||||| ||||||||||||||||| | ||| || | ||| |||||||||||| |  |||||| |||| ||| | |||||| ||    
T  50086776 aggagaatgttaaccagtgcccccggggcattggttaagcagctaaaagaggcaagattttattaaaaaatggtgtaataattagttagttaaaagtaac 50086677  T
Q  325 agcttatatttccaaga 341  Q
    || ||||||||||||||    
T  50086676 agtttatatttccaaga 50086660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 372
Target Start/End: Original strand, 20775069 - 20775187
Alignment:
Q  254 cattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 352  Q
    ||||||||||||| |||||  |||||||||||||| ||||||| ||||||| |||| || || |||| | | | |||||||||| |||| | || |||||    
T  20775069 cattggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaataatatcttatatttctaagaca-aatttttt 20775167  T
Q  353 atttatagattccttaacca 372  Q
    |||||||||||| |||||||    
T  20775168 atttatagattcattaacca 20775187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 351
Target Start/End: Complemental strand, 3319365 - 3319268
Alignment:
Q  254 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttt 351  Q
    ||||| ||||||| |||| ||| ||| |||||||||||| ||||| ||||||||| || || |||| |||||| ||||||||  || |||||||||||    
T  3319365 cattgattaagcatcaaaagaaataaatttttattaaaaggtaatataattattatttgatgaaaaatgacagtttatatttttaaaatagaaatttt 3319268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 20542664 - 20542600
Alignment:
Q  300 taattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattcc 365  Q
    |||||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||||| ||||||    
T  20542664 taattactacttgataaaaagtgacagtttatatttacaagatagaaa-ttttatttatggattcc 20542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 378
Target Start/End: Original strand, 27284066 - 27284193
Alignment:
Q  251 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 349  Q
    ||||||||||||| || |||||  || ||||||||||| |||||||  || ||| |||| || || |||||| ||| ||||||||||||||| | |||||    
T  27284066 gggcattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgatcaaaagtaacatcttatatttccaagaca-aaatt 27284164  T
Q  350 tttatttatagattccttaaccagtgccc 378  Q
    | ||| | ||||||||||||||| |||||    
T  27284165 tctatatgtagattccttaaccattgccc 27284193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 367
Target Start/End: Complemental strand, 37431876 - 37431785
Alignment:
Q  275 agtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattcctt 367  Q
    |||||||||||||| ||||||  || |||||||||||||| |||||| ||| |||||| ||  |||||| |||||||||||| || |||||||    
T  37431876 agtaagtttttattgaaaagttgtgcaattattacttaattaaaagtaacatcttataattttaagata-aaatttttatttgtaaattcctt 37431785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 51759207 - 51759263
Alignment:
Q  268 caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 324  Q
    |||||||||||||||||||||||||| ||||||| |||||||| |  ||||||||||    
T  51759207 caaatgaagtaagtttttattaaaaaataatgtagttattactaataaaaaagtgac 51759263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 372
Target Start/End: Original strand, 53142777 - 53142896
Alignment:
Q  253 gcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttt 351  Q
    |||||||||||||| || ||  || ||| ||||||| ||||| | |||||||||||||||||| |||||| | | ||||||||| || || | || ||||    
T  53142777 gcattggttaagcaaccgaaacaaataactttttataaaaaaatgatgtaattattacttaatcaaaagttaaaacttatattttcatgaca-aattttt 53142875  T
Q  352 tatttatagattccttaacca 372  Q
    ||||||||| |||||||||||    
T  53142876 tatttatagcttccttaacca 53142896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 380
Target Start/End: Complemental strand, 41142374 - 41142284
Alignment:
Q  289 aaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 380  Q
    |||||||||||||||||||| ||||| |||||| | | ||||| ||| ||||| | ||||||||||| ||  |||||||||||| |||||||    
T  41142374 aaaaagtaatgtaattattatttaatcaaaagtaagaccttattttttcaagaca-aaatttttattcatgaattccttaaccaatgccccg 41142284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 54248993 - 54249060
Alignment:
Q  268 caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatattt 335  Q
    |||| ||||||||||||||||||||| || ||||||||| |||| ||||||| | |||| ||||||||    
T  54248993 caaaagaagtaagtttttattaaaaaatattgtaattatcacttgataaaaaataacagtttatattt 54249060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 372
Target Start/End: Original strand, 22019621 - 22019718
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    ||||||||||| |  |||||||  |||||| ||||||||||| ||| | ||| |||||||||  |||| | ||||||| ||||||||||||||||||||    
T  22019621 aagtaagttttcaagaaaaagttgtgtaatcattacttaatagaaaataacatcttatattttaaagaca-aaattttcatttatagattccttaacca 22019718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 13967870 - 13967969
Alignment:
Q  281 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 380  Q
    ||||||| |||||||  | |||| ||||||| ||||||| | ||| |||||||| |||||| | |||||| ||||| ||||||||||||| | |||||||    
T  13967870 tttttatgaaaaagttgtataatcattacttgataaaaaataacatcttatattaccaagaca-aaatttctatttgtagattccttaactattgccccg 13967968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 14347191 - 14347118
Alignment:
Q  300 taattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtg 375  Q
    ||||||||||||||| |||| | | | |||||||||  ||||||  ||||||||||||||| ||||||||||||||    
T  14347191 taattattacttaatcaaaaatcaaaacttatatttttaagata--aatttttatttatagtttccttaaccagtg 14347118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 378
Target Start/End: Original strand, 55090799 - 55090901
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 373  Q
    |||||| ||||||| |||||||  ||||||||| ||||||| |||||| | | ||||||||| ||||| | || |||| |||||||| |||||||||||     
T  55090799 aagtaactttttat-aaaaagttgtgtaattataacttaatcaaaagtcaaaacttatattttcaagaca-aatttttcatttatagtttccttaaccaa 55090896  T
Q  374 tgccc 378  Q
    |||||    
T  55090897 tgccc 55090901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 2565506 - 2565412
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaa 369  Q
    ||||||||||||||  ||||||  |||||| ||||||| || |||||| |||  |||| ||| ||||||| |||||| ||||||||||||| ||||    
T  2565506 aagtaagtttttatagaaaagttgtgtaatcattacttgatcaaaagtaacattttatgttttcaagata-aaatttatatttatagattctttaa 2565412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 12094976 - 12095082
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 373  Q
    |||||||||||||| |||||||  |||||| ||||||| || |||||| | | ||||||||| |||   | |||||| ||||| ||||||||||||| |     
T  12094976 aagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaatatcttatattttcaatgca-aaatttctatttgtagattccttaactat 12095074  T
Q  374 tgccccga 381  Q
    ||||||||    
T  12095075 tgccccga 12095082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 16341190 - 16341100
Alignment:
Q  281 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    ||||||| ||||| | ||||||| |||||||||| |||||| |||  ||||||||| |||| | ||||||| |||| || ||||||||||||    
T  16341190 tttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaatttt-atttgtaaattccttaacca 16341100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 427
Target Start/End: Complemental strand, 30127719 - 30127684
Alignment:
Q  392 tttgagaaaataaaattattgaatgtaaccacatgt 427  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30127719 tttgagaaaatgaaattattgaatgtaaccacatgt 30127684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 45921426 - 45921337
Alignment:
Q  281 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    |||||||||||| ||  ||||||||||||||||| || ||| | | ||||||||| ||||| | || ||| |||||||||||||||||||||    
T  45921426 tttttattaaaa-gttgtgtaattattacttaatcaatagtcaaaacttatattttcaagaca-aattttctatttatagattccttaacca 45921337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 20119952 - 20120002
Alignment:
Q  385 ataataatttgagaaaataaaattattgaatgtaaccacatgtcttagtgt 435  Q
    |||||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  20119952 ataataatttgagaaaatgaaataatttaatgtaatcacatgtgttagtgt 20120002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 427
Target Start/End: Original strand, 24875735 - 24875773
Alignment:
Q  389 taatttgagaaaataaaattattgaatgtaaccacatgt 427  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  24875735 taatttgagaaaatagaataattgaatgtaaccacatgt 24875773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 366
Target Start/End: Original strand, 44190255 - 44190328
Alignment:
Q  292 aagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattcct 366  Q
    |||| ||||||||||||||| || |||||| ||| ||||||||| ||||||| |||||| ||||| || ||||||    
T  44190255 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagata-aaatttatatttgtatattcct 44190328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 341
Target Start/End: Original strand, 16072310 - 16072427
Alignment:
Q  226 aaggagaatgttaaccagggcc-ccggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 323  Q
    ||||| ||||||||| || ||| ||| | ||||||||||||| | ||| || ||||| |||||||||||| | ||||||| |||| ||| | |||||| |    
T  16072310 aaggacaatgttaacaagtgccgccgagacattggttaagcagctaaaagaggtaagattttattaaaaaatgatgtaataattagttagtcaaaagtaa 16072409  T
Q  324 cagcttatatttccaaga 341  Q
    | | ||||||||||||||    
T  16072410 cggtttatatttccaaga 16072427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 19480555 - 19480616
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatattt 335  Q
    |||||||||||||| |||||||  |||||| ||||||| || |||||| ||| |||||||||    
T  19480555 aagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatattt 19480616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 50269864 - 50269905
Alignment:
Q  386 taataatttgagaaaataaaattattgaatgtaaccacatgt 427  Q
    |||||||||||||||||  |||||||||||||| ||||||||    
T  50269864 taataatttgagaaaattgaattattgaatgtacccacatgt 50269905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 320
Target Start/End: Original strand, 48202457 - 48202549
Alignment:
Q  230 agaatgttaaccagggcccc-ggggcattggttaagcac-caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaag 320  Q
    |||||| ||||||| ||||| |||||||||||||||||  ||||  | |||||||||||| | || ||| |||||||||||||| || |||||    
T  48202457 agaatgctaaccagtgccccaggggcattggttaagcaaacaaaacaggtaagtttttataagaaggtagtgtaattattacttcatcaaaag 48202549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 226 - 377
Target Start/End: Original strand, 17506233 - 17506386
Alignment:
Q  226 aaggagaatgttaaccagggccccg-gggcattggttaagcaccaaatgaagtaagtttt--tattaaaaagtaatgtaattattacttaataaaaagtg 322  Q
    |||||||||||||||| | ||| |  |||||||||||| |||||||| ||||||| ||||  ||||||||||||||||||||||||||| ||||||||||    
T  17506233 aaggagaatgttaaccggtgcctctcgggcattggttaggcaccaaaagaagtaattttttttattaaaaagtaatgtaattattacttgataaaaagtg 17506332  T
Q  323 acagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcc 377  Q
    |||| |||||||||||| ||| ||| || |||||||||||| |||||||||||||    
T  17506333 acagtttatatttccaaaatataaa-ttatatttatagatttcttaaccagtgcc 17506386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 374
Target Start/End: Complemental strand, 21809922 - 21809802
Alignment:
Q  253 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 352  Q
    ||||||||||||| | |||| || ||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||||||| |||| | | | || |    
T  21809922 gcattggttaagcgctaaataaaataagtttttattaaaaagtaacgtaattattacttgataaaaagtgacaatttatatttctaagaca-acaattct 21809824  T
Q  353 atttatagattccttaaccagt 374  Q
    ||||||||||| ||||||||||    
T  21809823 atttatagatttcttaaccagt 21809802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 369
Target Start/End: Original strand, 4803147 - 4803268
Alignment:
Q  248 ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaat-aaaaagtgacagcttatatttccaagatagaa 346  Q
    ||||||||| |||||||||||||| ||||||| |||||| |||||||||||||||||||||||| || |||||||  ||| ||||||||| || | ||||    
T  4803147 ccggggcatcggttaagcaccaaaagaagtaaatttttactaaaaagtaatgtaattattacttgataaaaaagtagcagtttatatttcaaacacagaa 4803246  T
Q  347 atttttatttatagattccttaa 369  Q
    | || ||||||||||||| ||||    
T  4803247 a-ttctatttatagattctttaa 4803268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 335
Target Start/End: Original strand, 10008190 - 10008272
Alignment:
Q  254 cattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatattt 335  Q
    ||||||||||||| ||||| |||||||||||||||||||||||  |||||||||||||| || |||||| || | ||||||||    
T  10008190 cattggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaaccgtttatattt 10008272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 369
Target Start/End: Original strand, 2398041 - 2398120
Alignment:
Q  289 aaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaa 369  Q
    ||||||| |||||||||||||||||| |||||| | | ||||||||| ||||||| || ||| ||||||||||||||||||    
T  2398041 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatattttcaagata-aattttctatttatagattccttaa 2398120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 378
Target Start/End: Original strand, 6770827 - 6770955
Alignment:
Q  251 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaa-gtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaat 348  Q
    |||||||||||||||| |||||  |||| | ||||||| ||||| || |||||||||||| ||||| |||||| | |  |||||||| ||||||| || |    
T  6770827 gggcattggttaagcaaccaaaacaagtcactttttataaaaaaagttatgtaattattatttaatcaaaagtcaaaatttatattttcaagata-aatt 6770925  T
Q  349 ttttatttatagattccttaaccagtgccc 378  Q
    || ||||||||| ||||||||||| |||||    
T  6770926 ttctatttatagtttccttaaccaatgccc 6770955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 370
Target Start/End: Complemental strand, 5611224 - 5611129
Alignment:
Q  274 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaac 370  Q
    |||||||||||||| || ||||  | ||||||||| || || |||||| ||| |||||||||| |||| | |||||| |||||||||||||||||||    
T  5611224 aagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatatttctaagaca-aaatttctatttatagattccttaac 5611129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 19418587 - 19418647
Alignment:
Q  249 cggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattatta 308  Q
    ||||| |||||||||||| ||||| |||||||| |||||||||||||| ||||||| ||||    
T  19418587 cggggtattggttaagcatccaaaagaagtaagattttattaaaaagtgatgtaataatta 19418647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 10252964 - 10253051
Alignment:
Q  255 attggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaaga 341  Q
    |||||||||||| ||||| |||||||| |||||||||||| | ||||||| |||| ||| | |||| | |||| |||||||| |||||    
T  10252964 attggttaagcaaccaaaagaagtaagattttattaaaaaatgatgtaataattagttagtcaaaaataacagtttatattttcaaga 10253051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 18493255 - 18493330
Alignment:
Q  268 caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagata 343  Q
    ||||| |||||||||||||| |||||||  |||||| ||||||| || |||||| |||  |||||||| |||||||    
T  18493255 caaatcaagtaagtttttataaaaaagttttgtaataattacttgatcaaaagtaacattttatattttcaagata 18493330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 20208100 - 20208011
Alignment:
Q  281 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    |||||||||||| ||||||||||||||||||||| |||||| |   ||||||||| ||| | | || ||| ||||||||||||| |||||||    
T  20208100 tttttattaaaa-gtaatgtaattattacttaatcaaaagtcaatacttatattttcaaaaca-aattttatatttatagattcgttaacca 20208011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 22102123 - 22102034
Alignment:
Q  281 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    |||||||||||| ||||||||||||||||||||| |||||| |   ||||||||| ||| | | || ||| ||||||||||||| |||||||    
T  22102123 tttttattaaaa-gtaatgtaattattacttaatcaaaagtcaatacttatattttcaaaaca-aattttatatttatagattcgttaacca 22102034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 341
Target Start/End: Complemental strand, 17900891 - 17900773
Alignment:
Q  225 taaggagaatgttaaccagggccccgg-ggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg 322  Q
    ||||||||||||||||||| ||||| | || ||||||||||||   ||| || ||||| ||||||||||||||  |||||| |||| ||| | ||||||     
T  17900891 taaggagaatgttaaccagtgcccccgaggtattggttaagcagttaaaagaggtaagattttattaaaaagtggtgtaataattagttagtcaaaagta 17900792  T
Q  323 acagcttatatttccaaga 341  Q
    | || |||||| |||||||    
T  17900791 agagtttatatctccaaga 17900773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 370
Target Start/End: Complemental strand, 26608998 - 26608907
Alignment:
Q  277 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaac 370  Q
    |||| |||||||||||||| ||||||| ||||  || | |||||| |||| |||||||| ||||  | || ||||||||| |||||||||||||    
T  26608998 taagattttattaaaaagtgatgtaataattagctagtcaaaagtaacagtttatattttcaag--acaactttttatttttagattccttaac 26608907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 2820416 - 2820376
Alignment:
Q  385 ataataatttgagaaaataaaattattgaatgtaaccacat 425  Q
    ||||||||||||||||||||||| | ||||||||| |||||    
T  2820416 ataataatttgagaaaataaaataaatgaatgtaatcacat 2820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 370
Target Start/End: Original strand, 32134040 - 32134159
Alignment:
Q  251 gggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 349  Q
    |||||||||||||||| | |||  |||||||||||  | |||||||  |||||| ||||||| ||||||| | ||| ||||||||  ||| | | |||||    
T  32134040 gggcattggttaagcatctaaaataagtaagttttcttgaaaaagttgtgtaatcattacttgataaaaaataacatcttatattctcaaaaca-aaatt 32134138  T
Q  350 tttatttatagattccttaac 370  Q
    | ||||| |||||||||||||    
T  32134139 tctatttgtagattccttaac 32134159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 246 - 380
Target Start/End: Complemental strand, 22547 - 22414
Alignment:
Q  246 ccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagataga 345  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| || |||||||||||| | |||||||||||| | | |    
T  22547 ccccgaggcattggttaagcaccaaaagaagtaagtttttattaaagagtaatgtaattattatttgataaaaagtgacggtttatatttccaacaca-a 22449  T
Q  346 aatttttatttatagattccttaaccagtgccccg 380  Q
    || || |||||||||||||||||| ||||| ||||    
T  22448 aagttatatttatagattccttaatcagtgtcccg 22414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 370
Target Start/End: Complemental strand, 975 - 861
Alignment:
Q  256 ttggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatt 355  Q
    |||||||| ||| |||| |||||| ||||||||| || ||||||||||||||| |||||||||| ||| || |||||||||||||| ||||| || ||||    
T  975 ttggttaaacactaaataaagtaaatttttattagaatgtaatgtaattattatttaataaaaaatgatagtttatatttccaagacagaaaattctatt 876  T
Q  356 tatagattccttaac 370  Q
    |||||||||||||||    
T  875 tatagattccttaac 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 255 - 380
Target Start/End: Complemental strand, 1219 - 1095
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    |||||||||| | ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||| || |||    
T  1219 attggttaagaatcaaataaaataagcttttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatattttcaaga-aaaaaattctat 1121  T
Q  355 ttatagattccttaaccagtgccccg 380  Q
    ||||| ||| ||| ||||||| ||||    
T  1120 ttataaatttcttgaccagtgtcccg 1095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 347
Target Start/End: Complemental strand, 16944 - 16852
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaa 347  Q
    ||||||||||||||||| ||| ||||||||||||||||| | || |||||||||||| |||||||||||||| |||||||| ||||| |||||    
T  16944 attggttaagcaccaaaagaaataagtttttattaaaaaattatataattattacttgataaaaagtgacagtttatattttcaagacagaaa 16852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 273 - 380
Target Start/End: Complemental strand, 1378 - 1261
Alignment:
Q  273 gaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt-----------gacagcttatatttccaagatagaaatttttatttataga 361  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||           ||||| |||||||||||||| ||||| || ||||||||||    
T  1378 gaagtaagtttttattaaaaagaaatgtaattattacttgataaaaagttgataaaaagtgacagtttatatttccaagacagaaa-ttctatttataga 1280  T
Q  362 ttccttaaccagtgccccg 380  Q
    |||||||||| ||||||||    
T  1279 ttccttaacccgtgccccg 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 376
Target Start/End: Original strand, 52011 - 52131
Alignment:
Q  255 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 354  Q
    ||||||||| | | |||| ||||||||||||||||||||||||||||||||||| ||  |||||| |||||  ||||||||| |||| | | | || |||    
T  52011 attggttaaacgctaaataaagtaagtttttattaaaaagtaatgtaattattatttggtaaaaaatgacaatttatatttctaagaca-acaattctat 52109  T
Q  355 ttatagattccttaaccagtgc 376  Q
    ||||||||| ||||||| ||||    
T  52110 ttatagatttcttaacccgtgc 52131  T

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Target: scaffold0299 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 372
Target Start/End: Complemental strand, 18136 - 18014
Alignment:
Q  251 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaa-gtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaat 348  Q
    |||||||||||||||| |||||  |||||| ||||||| ||||| ||  ||||||||||||||||| |||||| | | |||||||||  |||||| || |    
T  18136 gggcattggttaagcaaccaaaacaagtaactttttataaaaaaagttgtgtaattattacttaatcaaaagtcaaaacttatatttttaagata-aatt 18038  T
Q  349 ttttatttatagattccttaacca 372  Q
    || ||||||||| |||||||||||    
T  18037 ttctatttatagtttccttaacca 18014  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 369
Target Start/End: Complemental strand, 30105 - 29988
Alignment:
Q  252 ggcattggttaagcac-caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattt 350  Q
    |||||||||||| ||| ||||  |||||||||||||| ||||  |  ||||||||||| ||||| |||||| ||| ||||||||| ||| ||| || |||    
T  30105 ggcattggttaaacactcaaaacaagtaagtttttatgaaaagtttgtgtaattattatttaattaaaagtaacatcttatattttcaaaata-aagttt 30007  T
Q  351 ttatttatagattccttaa 369  Q
     ||||| ||||||||||||    
T  30006 ctatttgtagattccttaa 29988  T

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Target: scaffold0205 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 21424 - 21465
Alignment:
Q  386 taataatttgagaaaataaaattattgaatgtaaccacatgt 427  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  21424 taatagtttgagaaaataaaataattgaatgtaaccacatgt 21465  T

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Target: scaffold0079 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 372
Target Start/End: Original strand, 51671 - 51761
Alignment:
Q  281 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    ||||||| ||||| | ||||||| |||||||||| |||||| |||  ||||||||| |||| | ||||||| |||| || ||||||||||||    
T  51671 tttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaatttt-atttgtaaattccttaacca 51761  T

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Target: scaffold0592 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 9073 - 9024
Alignment:
Q  247 cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagta 296  Q
    ||||| ||||||||||||| | |||| ||||||||| |||||||||||||    
T  9073 cccggagcattggttaagcgctaaataaagtaagttgttattaaaaagta 9024  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 422
Target Start/End: Complemental strand, 151452 - 151415
Alignment:
Q  385 ataataatttgagaaaataaaattattgaatgtaacca 422  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  151452 ataataatttgagaaaataaaataattaaatgtaacca 151415  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 120729 - 120784
Alignment:
Q  316 aaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 372  Q
    |||||||||| ||||||||| ||||| | |||||| ||||| |||||||||||||||    
T  120729 aaaagtgacatcttatattttcaagaca-aaatttctatttgtagattccttaacca 120784  T

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