View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12387_low_1 (Length: 584)
Name: NF12387_low_1
Description: NF12387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12387_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 47107324 - 47107714
Alignment:
| Q |
18 |
gtgtgattttatttttggatcaaatgattattttaaaaattgcctataaaagagactgatttcaaaatttagtttctatggtgattgaaaaataagtgtg |
117 |
Q |
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| T |
47107324 |
gtgtgattttatttttggatcaaatgattattttaaaaattgcctataaaagagactgatttcaaaatttagtttctatg-tgattgaaaaataagtgtg |
47107422 |
T |
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| Q |
118 |
agaagtttcaaaacatttagtaacaaaagtaatgaatgactgatggtgcttaatatcaatttaatgtttcttaagtaatttataatcttaaacaccttca |
217 |
Q |
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| T |
47107423 |
agaagtttcaaaacatttagtaacaaaagtaatgaatgactgatggtgcttaatatcaatttaatgtttcttaagtaatttataatcgtaaacaccttca |
47107522 |
T |
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| Q |
218 |
gatattttgttatgagtaaactcctttaaatatggcataccaggagtaccatatatcttgaagcagttttttcatagat-ggggatcaaggaagccgtaa |
316 |
Q |
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| T |
47107523 |
gatattttgttatgagtaaactcctttaaatatggcataccaggagtaccatatatcttgaagcagttttttcatagatgggggatcaaggaagccgtaa |
47107622 |
T |
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| Q |
317 |
gacactattactggaataagttgaaatgatacatgttaaaaagacttaatttaagattaatattacagccaaaaattctaaaatgtactcac |
408 |
Q |
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| T |
47107623 |
gacactattactggaataagttgaaatgatacatgttaaaaagatttaatttaagattaatattacagccaaaaattctaaaatgtactcac |
47107714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 471 - 570
Target Start/End: Original strand, 47107777 - 47107872
Alignment:
| Q |
471 |
catggaattcgatctgtcaagagatatcagtttactgttttgaaaatatttaccgtctctttgtgcatgtttccttcatctagcttgaattatataattg |
570 |
Q |
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| T |
47107777 |
catggaattcgatctgtcaagagatatcagtttactgttttgaaaatatttaccgtctctctgtgcatgtttccttcat----cttgaattatataattg |
47107872 |
T |
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