View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12387_low_3 (Length: 273)
Name: NF12387_low_3
Description: NF12387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12387_low_3 |
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| [»] scaffold1300 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 8520955 - 8521120
Alignment:
| Q |
16 |
agacaaacaa-agcaccccaaacaacaacactagtacgtagtgaatagccgcaaaacataccaaaccaatatccttgatcaaaacacatacaaccaacac |
114 |
Q |
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| T |
8520955 |
agacaaacaagagcaccccaaacaacaacactagtacgtagtgaacaaccgcaaaacataccaaaacaatattcttgatcaaaacacatacagccaacac |
8521054 |
T |
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| Q |
115 |
atggctgaaagaacctgcgnnnnnnntctcaggacgcctcaacagaactactaccccatcgcacca |
180 |
Q |
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| T |
8521055 |
atggctgaaagaacctgcgaaaaaaatctcaggacgcctcaacagaactactaccccatcgcacca |
8521120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1300 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: scaffold1300
Description:
Target: scaffold1300; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 405 - 518
Alignment:
| Q |
141 |
tctcaggacgcctcaacagaactactaccccatcgcaccaaaagacactaagacactccaataattatgaggcataggacacctcccctggggctgaata |
240 |
Q |
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| T |
405 |
tctcaggacgcctcaacagaactactaccccatcgcaccaaaagacactaagacactccaataattatgaggcataggacacctcccctggggctgaaca |
504 |
T |
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| Q |
241 |
ggtccacctgaaca |
254 |
Q |
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| T |
505 |
ggtctacctgaaca |
518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1300; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 258 - 322
Alignment:
| Q |
16 |
agacaaacaa-agcaccccaaacaacaacactagtacgtagtgaatagccgcaaaacataccaaa |
79 |
Q |
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| T |
258 |
agacaaacaagagcaccccaaacaacaacactagtacgtagtgaacagccgcaaaacataccaaa |
322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1300; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 338 - 391
Alignment:
| Q |
26 |
agcaccccaaacaacaacactagtacgtagtgaatagccgcaaaacataccaaa |
79 |
Q |
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| T |
338 |
agcaccccaaacaacaacactagtacgtagtgaacagccgcaaaacataccaaa |
391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 10981150 - 10981071
Alignment:
| Q |
38 |
aacaacactagtacgtagtgaatagccgcaaaacataccaa-accaatatccttgatcaaaacacatacaaccaacacat |
116 |
Q |
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| T |
10981150 |
aacaacactagtatgtagtgaacagccccaaaacaaaccaataacaatatccttgaccataacacacacatccaacacat |
10981071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 10981031 - 10980974
Alignment:
| Q |
155 |
aacagaactactaccccatcgcaccaaaagacactaagacactccaataattatgagg |
212 |
Q |
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| T |
10981031 |
aacagaactactaccctatcgcactcaaagacactaaaacacttcgacaattatgagg |
10980974 |
T |
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