View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12388_low_1 (Length: 364)
Name: NF12388_low_1
Description: NF12388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12388_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 45142361 - 45142016
Alignment:
| Q |
1 |
taaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactatgatcaagaattac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142361 |
taaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactatgatcaagaattac |
45142262 |
T |
|
| Q |
101 |
aaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaattggaccgcttatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45142261 |
aaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaattggaccacttatt |
45142162 |
T |
|
| Q |
201 |
ttttaatagtagtaggaacacaactattaataacagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaa |
300 |
Q |
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|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142161 |
ttttaatagtagtaggcacacaactattaataacagaaaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaa |
45142062 |
T |
|
| Q |
301 |
gagagcagcttctgcaatatgcgtagcctttagtgtaattcctttc |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142061 |
gagagcagcttctgcaatatgcgtagcctttagtgtaattcctttc |
45142016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 45152774 - 45152661
Alignment:
| Q |
233 |
acagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagccttta |
332 |
Q |
| |
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|||| ||||||||||||||||||||| || ||||||||||||||||||||||| || || |||||||| | |||||||||||||||||| |||||||| |
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| T |
45152774 |
acagtgaagcctccatcgaccaccaagttttgtccactaatataagccgattcatcggaagcaagaaacatagcagcttctgcaatatgaccagccttta |
45152675 |
T |
|
| Q |
333 |
gtgtaattcctttc |
346 |
Q |
| |
|
|||||||||||||| |
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| T |
45152674 |
gtgtaattcctttc |
45152661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 227 - 342
Target Start/End: Complemental strand, 38256599 - 38256484
Alignment:
| Q |
227 |
ttaataacagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtag |
326 |
Q |
| |
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||||| || |||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||||||||||| | ||||| ||||||||||| | || |
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| T |
38256599 |
ttaatgactgagaagcctccatcaacgaccaagttgtgtccactaatataagcagattcatcagatgcaagaaacaaagcagtctctgcaatatgagcag |
38256500 |
T |
|
| Q |
327 |
cctttagtgtaattcc |
342 |
Q |
| |
|
|||| | ||||||||| |
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|
| T |
38256499 |
ccttcaatgtaattcc |
38256484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 34530943 - 34530995
Alignment:
| Q |
32 |
cgatgtttggatcaa-tttgaatcctacatcctcactgaggtcgatctcatca |
83 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
34530943 |
cgatatttggatcaactttgaatcctacatcctcgttgaggtcgatctcatca |
34530995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 12700681 - 12700778
Alignment:
| Q |
233 |
acagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctt |
330 |
Q |
| |
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|||||||| || ||||| || |||||||| || |||||||| ||| | | ||| || || |||||||| | ||| ||||||||||||||| ||||||| |
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|
| T |
12700681 |
acagagaaaccaccatcaactaccaaattatgaccactaatgtaaacagcttcatcagaagcaagaaacaaagctgcttctgcaatatgcttagcctt |
12700778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 29361452 - 29361487
Alignment:
| Q |
59 |
atcctcactgaggtcgatctcatcactatgatcaag |
94 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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|
| T |
29361452 |
atcctcactgaggtcgatcccatcactatgatcaag |
29361487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 30270658 - 30270623
Alignment:
| Q |
59 |
atcctcactgaggtcgatctcatcactatgatcaag |
94 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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|
| T |
30270658 |
atcctcactgaggtcgatcccatcactatgatcaag |
30270623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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