View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12389_high_2 (Length: 305)
Name: NF12389_high_2
Description: NF12389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12389_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 6444412 - 6444117
Alignment:
| Q |
1 |
caagctgcattagccatggaagaagctacaacttcatctccaaaaacttcaaagagaagaaaaatcaacaaccgtaaattctcaacgccgacaattcttc |
100 |
Q |
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| T |
6444412 |
caagctgcattagccatggaagaagctacaacttcatctccaaaaacttcaaagagaagaaaaatcaacaaccgtaaattctcaacgccgacaattcttc |
6444313 |
T |
|
| Q |
101 |
cgcagccggaaaaagaggaaaaatcctccggtgatacctccgaagaagaatttccagcttcatgttgttcaagcaatggatccgttcaactcaatgaaga |
200 |
Q |
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| T |
6444312 |
cgcagccggaaaaggaggaaaaatcctccggtgatatctccgaagaagaatttccagcttcctgttgttcaagcaatggatccgttcaactcgatgaaga |
6444213 |
T |
|
| Q |
201 |
aaggatcaaatcgttagatctagaggttagagaaattcaatttgaatttcatgaactgaaatgaacaatttaatgccgttatttatagatattctt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
6444212 |
aaggatcaaatcgttagatctagaggttagagaaattcaatttgaatttcatgaactgaaatgaacaatttaatgcctttatttatagattttctt |
6444117 |
T |
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