View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12389_high_3 (Length: 303)
Name: NF12389_high_3
Description: NF12389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12389_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 1490054 - 1490346
Alignment:
| Q |
1 |
gtgttgaaggagcattaggtatacgcgagtggttggaatcacaaggacatgaatacattgtcactgatgacaaagaaggactcaattctggttagcatta |
100 |
Q |
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| T |
1490054 |
gtgttgaaggagcattaggtatacgcgagtggttggaatcacaaggacatgaatacattgtcactgatgacaaagaaggactcaattctggttagcatta |
1490153 |
T |
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| Q |
101 |
tgccaaattgatacaccctcttattacgtctatgcggtaactaaacaaatatatttaattaagaatatgcagataatatctcaagtttgtgattgcttga |
200 |
Q |
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| T |
1490154 |
tgccaaattgatacaccctcttattacgtctatgcagtaactaaacaaatatatttaattaagaatatgcagataatatctcaagtttgtgattgcttga |
1490253 |
T |
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| Q |
201 |
acttatgactaatttttgtcatgttgccagaacttgagaagcacattcctgatctcaatgtcctgatatccacaccatttcaccctgcctatg |
293 |
Q |
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| T |
1490254 |
acttatgactaatttttgtcatgttgccagaacttgagaagcacattcctgatctcaatgtcctgatatccacaccatttcaccctgcctatg |
1490346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 1494831 - 1494952
Alignment:
| Q |
1 |
gtgttgaaggagcattaggtatacgcgagtggttggaatcacaaggacatgaatacattgtcactgatgacaaagaaggactcaattctggttagcatta |
100 |
Q |
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||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
1494831 |
gtgttgaaggagcattaggtatacgtgagtggcttgaatcacaaggacatgaatacattgtcactgatgacaaagaaggacctgattctggttagaattt |
1494930 |
T |
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| Q |
101 |
tgccaaattgatacaccctctt |
122 |
Q |
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| T |
1494931 |
tgacaaattaatccaccctctt |
1494952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 1495007 - 1495078
Alignment:
| Q |
222 |
tgttgccagaacttgagaagcacattcctgatctcaatgtcctgatatccacaccatttcaccctgcctatg |
293 |
Q |
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|||| |||||||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
1495007 |
tgttaccagaactcgagaagcacattcccgatctgcatgtcctgatatctacaccatttcaccctgcctatg |
1495078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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