View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12390_high_1 (Length: 985)
Name: NF12390_high_1
Description: NF12390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12390_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 866; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 1 - 968
Target Start/End: Complemental strand, 34466540 - 34465571
Alignment:
| Q |
1 |
aagatgagaatctaacgattcatacctcaaacttatgatttgaagtggatttgataagtttatatatgagttgttcggtcttcgtcaaacgaccaaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34466540 |
aagatgagaatctaacgattcatacctcaaacttatgatttgaaaaggatttgataagtttatatatgagttattcggtcttcgtcaaacgaccaaaatg |
34466441 |
T |
|
| Q |
101 |
gttttacggtgtgactatgagtttctattgattccaaggaaactgaatccttgttaaacattagcatttggcagcaagttttctttactgcttgcataca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466440 |
gttttacggtgtgactatgagtttctattgattccaaggaaactgaatccttgttaaacattagcatttggcagcaagttttctttactgcttgcataca |
34466341 |
T |
|
| Q |
201 |
aaataaaattaaattggaaagactataaaagaaatacaatttgggtagatttcaattagggtgatagaataaactataatgatattgtacgtccgaaaat |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466340 |
aaattaaattaaattggaaagactataaaagaaatacaatttgggcagattttaattagggtgatagaataaactataatgatattgtacgtccgaaaat |
34466241 |
T |
|
| Q |
301 |
attgcctaaacatatttgcaaactataccttttaatgttttattactacatgatataaccaatatatgcaaatgtgatgctgtcctagacaccacctgta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466240 |
attgcctaaacatatttgcaaactataccttttaatgttttattactacatgatataaccaatatatgcaaatgtgatgctgtcctagacaccacctgta |
34466141 |
T |
|
| Q |
401 |
atcaaagtcagttggcactgaggnnnnnnnn--taccacccacaaccatgtgagaattgtggcgtttgcttagagcataatctaaattcttaaacaaata |
498 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466140 |
atcaaagtcagttggcactgaggaaaaaaaaaataccacccacaaccatgtgagaattgtggcgtttgcttagagcataatctaaattcttaaacaaata |
34466041 |
T |
|
| Q |
499 |
gagtattcagcatatcaacgtccaaaatgtcattttcgttggtttggaaaataattccaacgaaaactaactattgttcgcctcgcccatgaacgaactg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466040 |
gagtattcagcatatcaacgtccaaaatgtcattttcgttggtttggaaaataattccaatgaaaactaactattgttcgcctcgcccatgaacgaactg |
34465941 |
T |
|
| Q |
599 |
tttgtgttaaccatatgagagttctacatgcaaatgccactagtaaacccataaatatgtaactgggaaattacatcagagttcaaagcggagagcagtt |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
34465940 |
tttgtgttaaccatatgagagttctacatgcaaatgccactagtaaacccataaatatgtaactgagaaattacatcagatttcaaagcggagagcagtt |
34465841 |
T |
|
| Q |
699 |
tcttagctctttgattggacggaactaccaaatcatcaaatgatttgtcttaacattaataacagaattgcattcannnnnnncataacattgaggttgc |
798 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
34465840 |
tcttagctctttgattggacggaactaccaaatcatcaaatgatttgtcttaacattaataacagaattgcattcatttttttcataacattggggttgc |
34465741 |
T |
|
| Q |
799 |
cagatttatactcaggtgtggcactaagttgtttgaattatttgggagttctagaatggtatattttctctagcttgatccttaaatgatgtattgttgg |
898 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34465740 |
cagatttatactcaggtgtggcactaagttgtttgaattatttgggagttctagaatggtatattttctctagcttgatccttaaatgatgtattgttgg |
34465641 |
T |
|
| Q |
899 |
tgatggagagtacttccttgattttgttgaaatggttgttatgttttgtgttgagttgaacggtagtagt |
968 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34465640 |
tgatggagaatacttccttgattttgttgaaatggttgttatgttttgtgttgagttgaacgatagtagt |
34465571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 152 - 284
Target Start/End: Complemental strand, 34464981 - 34464851
Alignment:
| Q |
152 |
tgttaaacattagcatttggcagcaagttttctttactgcttgcatacaaaataaaattaaattggaaagactataaaagaaatacaatttgggtagatt |
251 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||| ||||||||||| |||||| ||||||||||| ||| ||| ||||||||||||||||||||| ||| |
|
|
| T |
34464981 |
tgttaaacattagcatttcccagaaagttt-cttaactgcttgcatgcaaaattaaattaaattgaaaa-actgtaaaagaaatacaatttgggtgaatt |
34464884 |
T |
|
| Q |
252 |
tcaattagggtgatagaataaactataatgata |
284 |
Q |
| |
|
| || ||| ||||| ||| |||||||| ||||| |
|
|
| T |
34464883 |
ttaactagagtgattgaacaaactatattgata |
34464851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 438 - 520
Target Start/End: Complemental strand, 34464402 - 34464320
Alignment:
| Q |
438 |
ccacaaccatgtgagaattgtggcgtttgcttagagcataatctaaattcttaaacaaatagagtattcagcatatcaacgtc |
520 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| || || ||||||||||| || ||||||| |||||| ||| |||||||| |
|
|
| T |
34464402 |
ccacaaccatgtgagaatagtggtgtttgcttggaacaaaatctaaattccaaaccaaataggttattcaacatctcaacgtc |
34464320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 614 - 685
Target Start/End: Complemental strand, 43994714 - 43994643
Alignment:
| Q |
614 |
tgagagttctacatgcaaatgccactagtaaacccataaatatgtaactgggaaattacatcagagttcaaa |
685 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| ||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
43994714 |
tgagagttagacatgcaaatgccactagtaaatccagaaatatgtagctggaaaatcacatcagagttcaaa |
43994643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 865 - 914
Target Start/End: Complemental strand, 27807489 - 27807440
Alignment:
| Q |
865 |
tctctagcttgatccttaaatgatgtattgttggtgatggagagtacttc |
914 |
Q |
| |
|
||||||||||||||||||| | ||| | |||||||||||||||||||||| |
|
|
| T |
27807489 |
tctctagcttgatccttaattaatgaactgttggtgatggagagtacttc |
27807440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 666 - 714
Target Start/End: Original strand, 5317016 - 5317064
Alignment:
| Q |
666 |
aaattacatcagagttcaaagcggagagcagtttcttagctctttgatt |
714 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||||||||||||||||| |
|
|
| T |
5317016 |
aaattacatcaaagttcaaagcacaaagcagtttcttagctctttgatt |
5317064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 614 - 664
Target Start/End: Complemental strand, 27807684 - 27807634
Alignment:
| Q |
614 |
tgagagttctacatgcaaatgccactagtaaacccataaatatgtaactgg |
664 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| |||||||| ||||| |
|
|
| T |
27807684 |
tgagagttggacatgcaaatgccactagtaaatccagaaatatgtcactgg |
27807634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University