View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12390_high_5 (Length: 331)
Name: NF12390_high_5
Description: NF12390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12390_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 6663185 - 6663491
Alignment:
| Q |
7 |
agcagaacctgtgttgtagagagaaaattccctttctttaaaacggatatacgcacaacctacagttgctgctttcgtaaatggagtatatcctttatca |
106 |
Q |
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| T |
6663185 |
agcaggacttgtgttgtagagagaaaattccctttctttaaaacagatatacgcacaacctacagttgctgctttcgtaaatggagtatatcctttatca |
6663284 |
T |
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| Q |
107 |
aactcaatggtcacatggtcagaagaggttggagaatgtgacatgccaaaatacctgatattcttgattcgtttacgctcatcatgccgatatggtagcc |
206 |
Q |
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| T |
6663285 |
aactcaacggtcacatggtcagaagaggttggagaatgtgacatgccaaaatatctgatattcttgattcgtttacgctcatcatgccgatatggtagcc |
6663384 |
T |
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| Q |
207 |
gttctttagtaaatgggttgaagaaaaattgtgaagtttgatcaactcccacaagtaatagccaaccatcttttgaacaacaaatttcataatttttgta |
306 |
Q |
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| T |
6663385 |
gttctttagtaaaggggttgaagaaaaattgtgaagtttgatcaactcccacaagtaatagccaaccatcttttgaacaacaaatttcataatttatgta |
6663484 |
T |
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| Q |
307 |
ccaaggt |
313 |
Q |
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| T |
6663485 |
ccaaggt |
6663491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 124 - 300
Target Start/End: Original strand, 6655193 - 6655366
Alignment:
| Q |
124 |
gtcagaagaggttggagaatgtgacatgccaaaatacctgatattcttgattcgtttacgctcatcatgccgatatggtagccgttctttagtaaatggg |
223 |
Q |
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| T |
6655193 |
gtcaaaagaggttggagaatgtgacatgccaaaacacctgatattcgtgattcgtttatgctcaa-atg--gaagtggtagatcttcttttgtaaagggg |
6655289 |
T |
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| Q |
224 |
ttgaagaaaaattgtgaagtttgatcaactcccacaagtaatagccaaccatcttttgaacaacaaatttcataatt |
300 |
Q |
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| T |
6655290 |
ttgaagaaaaattgaaaacttttattaactccaactagtaatagccaaccatcttttgaacaacaaatttcataatt |
6655366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 13245889 - 13245988
Alignment:
| Q |
195 |
gatatggtagccgttctttagtaaatgggttgaagaaaaattgtgaagtttgatcaactcccacaagtaatagccaaccatcttttgaacaacaaatttc |
294 |
Q |
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||||||||||| ||||||| ||||| ||||||||||||| ||| || ||| | | |||| ||||||| ||||||||||||||||||||||||||| |
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| T |
13245889 |
gatatggtagcagttcttttgtaaaagggttgaagaaaacttgaaaacattggttaggagccaccagtaatatccaaccatcttttgaacaacaaatttc |
13245988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 6682196 - 6682146
Alignment:
| Q |
125 |
tcagaagaggttggagaatgtgacatgccaaaatacctgatattcttgatt |
175 |
Q |
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|||||||||||||| |||||||||||||||||| ||| | ||||| ||||| |
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| T |
6682196 |
tcagaagaggttggggaatgtgacatgccaaaacaccgggtattcctgatt |
6682146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 6682077 - 6682045
Alignment:
| Q |
262 |
taatagccaaccatcttttgaacaacaaatttc |
294 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
6682077 |
taatatccaaccatcttttgaacaacaaatttc |
6682045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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