View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12390_low_2 (Length: 573)
Name: NF12390_low_2
Description: NF12390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12390_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 13 - 553
Target Start/End: Original strand, 28093699 - 28094242
Alignment:
| Q |
13 |
aacctgtgcagtaaagctcccgcgtacacagggtcccggaaggggattacattcaattaattcatttttccaaatgctatgggtgccgaagtgtcttggt |
112 |
Q |
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| T |
28093699 |
aaccggtgcagtaaagctcccgcgtacacagggtcttggaagaggattacattcaattaattcatttttccaaatgctatgggtgccgaagtgtcttggt |
28093798 |
T |
|
| Q |
113 |
caatgtcgcgttcagtattcgtgtttgcaccaatggttcatagactctgcccccaacatccatcaagtctatttggttaaagcacttttgtcacatttca |
212 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28093799 |
caatgtcacgttcagtattcgtgtttgcaccaatggttcatagactctgcccccaacatccatcaagtctatttggttaaagcacttttgtcacatttca |
28093898 |
T |
|
| Q |
213 |
tcatagatacgcattcaaccggagcaaatgtgaaggggattcaaaatataaactt---aaatgtggtattgttgcattacaatattacataaagaggatt |
309 |
Q |
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| T |
28093899 |
tcatagatacgcattcaaccggagcaaatgtgaaggggattcaaaatataatctatcaacattttattttgttgcattacaatattacataaagaggatt |
28093998 |
T |
|
| Q |
310 |
ttgatagatgtctaataatctatcaacattttattttgctttctgttaagcatgaagagtgttagtgtggctaattttttcatggaatgtttaattgacc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28093999 |
ttgatagatgtctaataatctatcaacattttattttgctttctgttaagcatgaagagtgttagtgtggctaattttttcatggaatgtttaattgacc |
28094098 |
T |
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| Q |
410 |
cttttattctagtaacctctatttccaacaaatgcatgcatgcaagaataaatatatatgcacaaatatgacaccacatcgcaaactgttgcttatatat |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094099 |
cttttattctagtaacctctatttccaacaaatgcatgcatgcaagaataaatatatatgcacaaatatgacaccacatcgcaaactgttgcttatatat |
28094198 |
T |
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| Q |
510 |
acacaaacaatcaaacacaatacataataattgattcatgcttt |
553 |
Q |
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| T |
28094199 |
acacaaacaatcaaacacaatacataataattgattcatgcttt |
28094242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 87
Target Start/End: Complemental strand, 41330341 - 41330312
Alignment:
| Q |
58 |
attacattcaattaattcatttttccaaat |
87 |
Q |
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| T |
41330341 |
attacattcaattaattcatttttccaaat |
41330312 |
T |
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