View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12390_low_3 (Length: 539)
Name: NF12390_low_3
Description: NF12390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12390_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 132 - 522
Target Start/End: Original strand, 1542364 - 1542754
Alignment:
| Q |
132 |
gccgctgccgtaacctcctgccacattctccttccttccttccgcgctctctcaacaagacctaccacctcttccctcaacgatcaaaagtctaactggt |
231 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1542364 |
gccgctgccgtaacctcccgccacattctccttccttccttccgcgctctctcaacaagacctaccacctcttccctcaacgatcaaaaccctaactggt |
1542463 |
T |
|
| Q |
232 |
ctaaccatcctcctaaggaaaccatcttgcttgatggatgtgattttgaacactggcttgtgattatggagactcctgatggtgacgccaccagagatga |
331 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1542464 |
ctaacccttctcctaaggaaaccatcttgcttgatggatgtgattttgaacactggcttgtgattatggagactcctgatggtgacgccaccagagatga |
1542563 |
T |
|
| Q |
332 |
aattatcgatggttatatcaaaacattcgcggaggttatcggaaagtaatcatcataatatataaatgcatgatttattcttttgtctatgtgggtttta |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1542564 |
aattatcgatggttatatcaaaacattcgcggaggttatcggaaagtaatcatcataatatataaatgcatgatttattcttttgtctatgtgggtttta |
1542663 |
T |
|
| Q |
432 |
tctctataacattgacatgtttacatgtttaccgggattgacttgtcactgtgttttgtcatcttcatgttggtgctgcatagggttttat |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1542664 |
tctctataacattgacatgtttacatgtttaccgggattgacttgtcactgtgttttgtcatgttcatgttggtgctgcatagggttttat |
1542754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 1542251 - 1542296
Alignment:
| Q |
19 |
tggcgaaccaaatcatcactcgtgtcattcctaaaaccctaactcc |
64 |
Q |
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| T |
1542251 |
tggcgaaccaaatcatcactcgtgtcattcctaaaaccctaactcc |
1542296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 132 - 394
Target Start/End: Original strand, 32424254 - 32424516
Alignment:
| Q |
132 |
gccgctgccgtaacctcctgccacattctccttccttccttccgcgctctctcaacaagacctaccacctcttccctcaacgatcaaaagtctaactggt |
231 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||||||||||| | ||||||||||| |||||||| |||||||||||||||||||| ||||||| | |
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| T |
32424254 |
gccgctgccgtaacctcccgccacattctcctcccttccttccgcacactctcaacaagccctaccacatcttccctcaacgatcaaaaccctaactgct |
32424353 |
T |
|
| Q |
232 |
ctaaccatcctcctaaggaaaccatcttgcttgatggatgtgattttgaacactggcttgtgattatggagactcctgatggtgacgccaccagagatga |
331 |
Q |
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||||| ||| |||||| | ||| || ||||| ||||||| |||||||||||||||| ||| ||||| || ||||||||||| | | ||||||||| |
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| T |
32424354 |
ataaccgtccacctaagcataccgtcgtgcttaatggatgcaattttgaacactggctcgtggttatgtggaagcctgatggtgatcctagcagagatga |
32424453 |
T |
|
| Q |
332 |
aattatcgatggttatatcaaaacattcgcggaggttatcggaaagtaatcatcataatatat |
394 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |
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|
| T |
32424454 |
aattatcgatggttatatcaaaacattcgtggaggttatcggaaagtaataaccataatatat |
32424516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 144 - 375
Target Start/End: Original strand, 32419035 - 32419266
Alignment:
| Q |
144 |
acctcctgccacattctccttccttccttccgcgctctctcaacaagacctaccacctcttccctcaacgatcaaaagtctaactggtctaaccatcctc |
243 |
Q |
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|||||| | ||||| ||||| ||||||||||||||| |||| ||| | ||||||||||||||||||||||||| || |||| |||||||| | ||| | |
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| T |
32419035 |
acctcccgtcacatcctcctcccttccttccgcgctttctccacacgccctaccacctcttccctcaacgatcctaaccctaattggtctaatcgtccac |
32419134 |
T |
|
| Q |
244 |
ctaaggaaaccatcttgcttgatggatgtgattttgaacactggcttgtgattatggagactcctgatggtgacgccaccagagatgaaattatcgatgg |
343 |
Q |
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| |||||||| || ||||| |||||||| |||||||||||||||||||| | ||||||| ||||| ||||| | ||||||||||| ||||| ||| | |
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| T |
32419135 |
caaaggaaacgattttgctcgatggatgcgattttgaacactggcttgttgtgatggagaagcctgaaggtgatcctaccagagatgagattattgatag |
32419234 |
T |
|
| Q |
344 |
ttatatcaaaacattcgcggaggttatcggaa |
375 |
Q |
| |
|
||| |||||||| || || ||||||||||||| |
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| T |
32419235 |
ttacatcaaaaccttagctgaggttatcggaa |
32419266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 32424150 - 32424195
Alignment:
| Q |
19 |
tggcgaaccaaatcatcactcgtgtcattcctaaaaccctaactcc |
64 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32424150 |
tggcgaaccaaatcatcactcttgtcattcctaaaaccctaactcc |
32424195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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