View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12390_low_4 (Length: 379)
Name: NF12390_low_4
Description: NF12390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12390_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 11201114 - 11201464
Alignment:
| Q |
11 |
cacagacatgcaatgaacaaaacatatttgaggtttactacatcaggatctaaaatgtctaagcactttgattgtgcagataatccttaagtcttctact |
110 |
Q |
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| T |
11201114 |
cacagacatgcaatggacaaaacatatttgaggtttactacatcaggatctaaaatgtctaagcactttgattgtgcagataatccttaagtcttctact |
11201213 |
T |
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| Q |
111 |
ttatttgcacagttggaagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaacacaaaac |
210 |
Q |
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| T |
11201214 |
ttatttgcacagttggaagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaacacaaaac |
11201313 |
T |
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| Q |
211 |
cataaccgaaacagtcattaacggaaacaaaaggacaacggacttggacatcagcaacacaaccgaaactccataatctttcaagagacttcactcatag |
310 |
Q |
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| T |
11201314 |
cataaccgaaacagtcattaacggaaacaaaaggacaactgacttggacatcagcaacacaaccgaaactccataatctttcaagagacttcactcatag |
11201413 |
T |
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| Q |
311 |
gcttcaaccttaacatgcaccagcttaggctcttttgtaacagatgcatct |
361 |
Q |
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| T |
11201414 |
gcttcaaccttaacatgcaccagcttaggctcttttgtaacagatgcatct |
11201464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 105 - 361
Target Start/End: Original strand, 11162433 - 11162689
Alignment:
| Q |
105 |
tctactttatttgcacagttggaagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaaca |
204 |
Q |
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| T |
11162433 |
tctactttatttgcacagttggaagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaaca |
11162532 |
T |
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| Q |
205 |
caaaaccataaccgaaacagtcattaacggaaacaaaaggacaacggacttggacatcagcaacacaaccgaaactccataatctttcaagagacttcac |
304 |
Q |
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| T |
11162533 |
caaaaccataaccgaaacagtcattaacggaaacaaaaggacaactgacttggacatcagcaacacaaccgaaactccataatctttcaagagacttcac |
11162632 |
T |
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| Q |
305 |
tcataggcttcaaccttaacatgcaccagcttaggctcttttgtaacagatgcatct |
361 |
Q |
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| T |
11162633 |
tcataggcttcaaccttaacatgcaccagcttaggctcttttgtaacagatgcatct |
11162689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 11162385 - 11162436
Alignment:
| Q |
11 |
cacagacatgcaatgaacaaaacatatttgaggtttactacatcaggatcta |
62 |
Q |
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| T |
11162385 |
cacagacatgcaatggacaaaacatatttgaggtttactacatcaggatcta |
11162436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 249085 - 248995
Alignment:
| Q |
11 |
cacagacatgcaatgaacaaaacatatttgaggtttactacatcaggatctaaaatgtctaagcactttgattgtgcagataatccttaag |
101 |
Q |
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| T |
249085 |
cacagacatgcaatggacaaaacatatttgaggtttactacctcaggatctaaaatgtctaagcactttgattgtgcagataatccttaag |
248995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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