View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12390_low_6 (Length: 278)
Name: NF12390_low_6
Description: NF12390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12390_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 50916533 - 50916790
Alignment:
| Q |
1 |
tacaggtaagaattctttacaaactcaagtttatcaaacctcctctaggtttatacattaataatgactttattttaatgaatttacttgctagagttta |
100 |
Q |
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| T |
50916533 |
tacaggtaagaattctttacaa-ctcaagtttatcaaacctcctctaggtttatacattaataatgactttattttaatgaatttacttgctggagttta |
50916631 |
T |
|
| Q |
101 |
aagcgttctgctgttattagagcttcagatggtttccggcaaagagaccctgcatctcacacaattcacattgtgtcatttttaaataaataggagttat |
200 |
Q |
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| T |
50916632 |
aagcgttctgctgttattagagcttcagatggtttccggcaaagagaccctgcatctcacacaattcacattgtgtcatttttaaataaataggagttat |
50916731 |
T |
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| Q |
201 |
gtaattgtttgttgtcatgctgagttgtgaatgattgtggtgtaaaacaatttttcatt |
259 |
Q |
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| T |
50916732 |
gtaattgtttgttgtcatgctgagttgtgaatgattgtggtgtaaaacaattttacatt |
50916790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 42350899 - 42351041
Alignment:
| Q |
30 |
tttatcaaacctcctctaggtttatacattaataatgactttattttaatgaatttacttgctagagtttaaagcgttctgctgttattagagcttcaga |
129 |
Q |
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||||| |||||| |||||| ||||| || |||||| |||||||||||||||| |||||||| | |||| ||||||||| |||||||||||||| ||||| |
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| T |
42350899 |
tttatgaaacctactctagatttattcaataataaggactttattttaatga-tttacttgatgcagttcaaagcgttcggctgttattagagcatcaga |
42350997 |
T |
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| Q |
130 |
tggtttccggcaaagagaccctgcatctcacacaattcacattg |
173 |
Q |
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| T |
42350998 |
tgatttctggccaagagaccctgcatctcacacaattcacattg |
42351041 |
T |
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