View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12390_low_8 (Length: 239)
Name: NF12390_low_8
Description: NF12390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12390_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 53660749 - 53660971
Alignment:
| Q |
1 |
cttaagacattagatatatacatcttatattctctctcatatgtttctcaacgtttgctttccaattcactgtgagttcagaccaatagtctgcccaatg |
100 |
Q |
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| T |
53660749 |
cttaagacattagatatatacatcttatattctctctcatatgtttctcaacgtttgctttccaattcattgtgagttgagaccaataatctgcccaatg |
53660848 |
T |
|
| Q |
101 |
ggagggctgctaatgaacatcgcaacatagcataggaaagaccaacgtatatatggcttaagtgcaacgtggatgtggatttccaacaggaagataggtc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53660849 |
ggagggctgctaatgaacatcgcaacatagcataggaaagaccaacgtatatatggcttaagtgcaacatggatgtggatttccaacaggaagataggtc |
53660948 |
T |
|
| Q |
201 |
cacttcttttggatgttgtgctc |
223 |
Q |
| |
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|||||||||||||||||| |||| |
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|
| T |
53660949 |
cacttcttttggatgttgcgctc |
53660971 |
T |
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