View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12390_low_9 (Length: 237)
Name: NF12390_low_9
Description: NF12390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12390_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 43013456 - 43013657
Alignment:
| Q |
20 |
gagagcttttttatattaccattacaaggttcacacatttgatttgaactgggcaatttggtggaagataggaatgattaatttggtaaaatcgacccac |
119 |
Q |
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| T |
43013456 |
gagagcttttttatattaccattacaaggttcacacatttgatttgaactgggcaatttggtggaagataggaatgattaatttggtaaaatcgacccac |
43013555 |
T |
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| Q |
120 |
tttaaagtccacaggagtccctggaatatttgttgaagttttttatagcaaaaagtgacacttggtcagaaatgtggaaacaacttagggtaaggacaaa |
219 |
Q |
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| T |
43013556 |
ttcaaagtccacaggagtccctggaatatttgttgaagttttttatagcaaaaagtgacacttggtcagaaatgtggaaacaacttagggtaaggacaaa |
43013655 |
T |
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| Q |
220 |
at |
221 |
Q |
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|| |
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| T |
43013656 |
at |
43013657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 18221628 - 18221822
Alignment:
| Q |
22 |
gagcttttttatattaccattacaaggttcacacatttgatttgaactgggcaatttggtggaagataggaatgattaatttggtaaaatcgacccactt |
121 |
Q |
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| T |
18221628 |
gagcttttttatattaccattacaaggttcacacattttatttgaactgggcaatttggtggaaggtatgaatgattaatctggtaaaatcgacccactt |
18221727 |
T |
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| Q |
122 |
taaagtccacaggagtccctggaatatttgttgaagttttttatagcaaaaagtgacacttggtcagaaatgtggaaacaacttagggtaaggacaaa |
219 |
Q |
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| T |
18221728 |
caaagtccacaggagtccctgcaatatttgttcaag---tttatagcaaaaagtgacacttggtcagaaatgtggaaacaacttagggtaaggacaaa |
18221822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 5077296 - 5077112
Alignment:
| Q |
20 |
gagagcttttttatattaccattacaaggttcacacatttgatttgaactgggcaatttggtggaagataggaatgattaatttggtaaaatcgacccac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5077296 |
gagagcttttttatattaccattacaaggttcacacattttatttgaactgggcaatttggtggaaggtaggaatgattaatttggtaaaatcgacccac |
5077197 |
T |
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| Q |
120 |
tttaaagtccacaggagtccctggaatatttgttgaagttttttatagcaaaaagtgacacttggtcagaaatgtggaaacaacttagggtaagga |
215 |
Q |
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|| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |||||| |
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| T |
5077196 |
ttcaaagtccacagtagtccctgcaatatttgttgaag---tttatagc--------acacttggtcagaaacgtggaaacaacttaggttaagga |
5077112 |
T |
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