View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12391_high_2 (Length: 615)
Name: NF12391_high_2
Description: NF12391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12391_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 22 - 590
Target Start/End: Complemental strand, 10011737 - 10011179
Alignment:
| Q |
22 |
accttcagacgtt--tttcttaccacaattaataatgtaccttggtgtactatatggaaaacatgcaactgatctatttcccacgtatgttcacacacta |
119 |
Q |
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| T |
10011737 |
accttcagacgttgctttcttaccacaattaataat-taccttggtgtactatatggaaaacatgcagctgatctatttcccacgcatgttcacacacta |
10011639 |
T |
|
| Q |
120 |
aaccagcatctatcataacnnnnnnnattctagctcttcttcccatgctaactataggaatcacagtgctctcttcccttggttcaacaacacagcatcc |
219 |
Q |
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| T |
10011638 |
aaccagcatctatcataactttttttattctagctcttcttcccatgctaactttaggaatcacagtgctctcttcccttggttcaacagcacagtatcc |
10011539 |
T |
|
| Q |
220 |
atccaactcttcaacgccatctccatagctgcatgttctccgccagaatccttcatcaaccttcttcaacaacgaaatttacgacatgttttggatcgat |
319 |
Q |
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| T |
10011538 |
atccaactcttcaatgccatctccatagctgcatgttctccgccagaatctttca----------tcaacaacgaaatttacgacatgttttggatcgat |
10011449 |
T |
|
| Q |
320 |
tcaatgatcaccgaggatttcttattttttctgcaaaagatgaacacccctctttgttgtccaaatccaagctctgtggtagtgttctannnnnnnnact |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
10011448 |
tcaatgatcaccgaggatttcttattttttctgcaaaagatgaacacccctctttgttgtccaaatccaagctctgtggtggtgttcta-tttttttact |
10011350 |
T |
|
| Q |
420 |
gatatgaatttgatgtccaactcttctaaatcatttttgtctcccttcgaaaaaggaaagnnnnnnnnctcgtctgcttcagaaacgagaaagaatatag |
519 |
Q |
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| T |
10011349 |
gatatgaatttgatgtccaactcttctaaatcatttatgtctcccttcgaaaaaggaaagaaaaataactcttctgcttcagaaacgagaaagaatatag |
10011250 |
T |
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| Q |
520 |
aacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctcttctata |
590 |
Q |
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| T |
10011249 |
aacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctcttctata |
10011179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 498 - 585
Target Start/End: Complemental strand, 561652 - 561565
Alignment:
| Q |
498 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctctt |
585 |
Q |
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| T |
561652 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaaggaaaaaatttgatgtccaattctccaaaacaggaacacctctctt |
561565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 498 - 585
Target Start/End: Original strand, 17688782 - 17688868
Alignment:
| Q |
498 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctctt |
585 |
Q |
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|||||||||||||||||||||||| |||| ||||| |||||| ||||| ||| ||||| ||||||||||||||||| |||||||||| |
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| T |
17688782 |
tcagaaacgagaaagaatatagaagaaaaggacaa-ttttaaagaaaaaatttgatgtctaattctccaaaacaggaacacctctctt |
17688868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 498 - 585
Target Start/End: Complemental strand, 1678954 - 1678868
Alignment:
| Q |
498 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctctt |
585 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| || ||||| ||| ||||| ||||||||||||||||| |||||||||| |
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| T |
1678954 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaa-gaaaaaatttgatgtctaattctccaaaacaggaacacctctctt |
1678868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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