View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12391_high_3 (Length: 473)
Name: NF12391_high_3
Description: NF12391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12391_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 247 - 414
Target Start/End: Complemental strand, 38747210 - 38747043
Alignment:
| Q |
247 |
caaagtcagtcaataatttgctttctgaatttgtactttgtattatgtaacttatgcattttgattttatgtataaaagggaatattttgatccatgtgt |
346 |
Q |
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| T |
38747210 |
caaagtcagtcaataatttgctttctgaatttgtactttgtactatgtaacttatgcattttgattttatgtataaaagggaatattttgatccatgtgt |
38747111 |
T |
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| Q |
347 |
ttttgtgctttacttttcattggtgactattactatgctacgtggtaaaaatctactcaatagaggat |
414 |
Q |
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| T |
38747110 |
ttttgtgctttacttttcattggtgactattactaagctacgtggtaaaaatctactcaatagaggat |
38747043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 38747421 - 38747280
Alignment:
| Q |
20 |
gatctcggatgggttaatgaactgctgatgtagaagagtgttgaattttgaagatggtgccaaaatggtgattatcagtggagtgaagtgtaaatattga |
119 |
Q |
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| T |
38747421 |
gatctcggatgggttaatgaactgctgatgtagaagagtgttgaattttgaagatggtgccaaaatggtgattatcagtggagtgaagtgtaaatattga |
38747322 |
T |
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| Q |
120 |
aggattaagctatattacatatttatccctgcaattgtcaag |
161 |
Q |
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| T |
38747321 |
aggattaagctatattacatatttatccctgcaattgtcaag |
38747280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 411 - 459
Target Start/End: Complemental strand, 38747025 - 38746977
Alignment:
| Q |
411 |
ggattggggtatttgttgtatgaaagtgaaacaagaatattagtgcaca |
459 |
Q |
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| T |
38747025 |
ggattggggtatttgttgtatgaaagtgaaacaggaatattagtgcaca |
38746977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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