View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12391_low_1 (Length: 823)

Name: NF12391_low_1
Description: NF12391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12391_low_1
NF12391_low_1
[»] chr7 (7 HSPs)
chr7 (45-808)||(44541331-44542094)
chr7 (390-439)||(29060731-29060780)
chr7 (390-438)||(24996676-24996724)
chr7 (390-431)||(42607088-42607129)
chr7 (390-438)||(24995859-24995907)
chr7 (390-437)||(32871134-32871181)
chr7 (390-431)||(42607812-42607853)
[»] chr5 (2 HSPs)
chr5 (379-765)||(472715-473096)
chr5 (390-431)||(4789527-4789568)
[»] chr1 (11 HSPs)
chr1 (385-525)||(36272453-36272593)
chr1 (385-525)||(6768024-6768164)
chr1 (458-532)||(37422470-37422544)
chr1 (390-439)||(48835089-48835138)
chr1 (390-437)||(4640535-4640582)
chr1 (390-437)||(4641756-4641803)
chr1 (385-431)||(11031433-11031479)
chr1 (385-431)||(11032219-11032265)
chr1 (385-431)||(47334900-47334946)
chr1 (390-431)||(38931321-38931362)
chr1 (390-431)||(41884229-41884270)
[»] chr2 (4 HSPs)
chr2 (388-525)||(23462410-23462547)
chr2 (385-430)||(5005464-5005509)
chr2 (385-475)||(32471941-32472031)
chr2 (395-476)||(43743795-43743876)
[»] chr6 (4 HSPs)
chr6 (411-519)||(23593852-23593960)
chr6 (390-519)||(8383930-8384059)
chr6 (463-519)||(8383236-8383292)
chr6 (397-498)||(24125986-24126087)
[»] chr3 (6 HSPs)
chr3 (390-439)||(33455773-33455822)
chr3 (390-436)||(49161803-49161849)
chr3 (388-417)||(26836351-26836380)
chr3 (385-430)||(41553348-41553393)
chr3 (385-450)||(43768028-43768092)
chr3 (390-431)||(51421675-51421716)
[»] chr8 (3 HSPs)
chr8 (390-431)||(37562302-37562343)
chr8 (441-532)||(6013026-6013117)
chr8 (385-450)||(42345396-42345461)
[»] chr4 (4 HSPs)
chr4 (396-438)||(34371475-34371517)
chr4 (390-431)||(25970113-25970154)
chr4 (385-450)||(39429227-39429292)
chr4 (397-498)||(47377531-47377632)


Alignment Details
Target: chr7 (Bit Score: 660; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 45 - 808
Target Start/End: Complemental strand, 44542094 - 44541331
Alignment:
Q  45 tcacatacactgacgaagatacctcaaaagcaactgagactacctcccttgatcacaaggaagggctgatagaacaagaattcaagaaatattactgtga 144  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44542094 tcacatacaccgacgaagatacctcaaaagcaactgagactacctcccttgatgacaaggaagggctgatagaacaagaattcaagaaatattactgtga 44541995  T
Q  145 aagcaatgtttgcagtgacttatatgcaaacgatggttcacgctatgttggaaatgaagatgcagtacaaaaagaagcaattttgaacgaaacagtgaat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44541994 aagcaatgtttgcagtgacttatatgcaaacgatggttcacgctatgttggaaatgaagatgcagtacaaaaagaagcaattttgaacgaaacagcgaat 44541895  T
Q  245 ttcactatgctgcaaaaggaacaaccatcaatattgacatcatgggttatgcccatgctgatgttaggattgctaatgctcctagttctgctgacccgtg 344  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44541894 ttcactatgctgcaaaaggaacaaccatcaatattgacatcctgggttatgcccatgctgatgttaggattgctaatgctcctagttctgctgacccgtg 44541795  T
Q  345 gcttacaggaatctcttaatgtttttgatgatgcgattgatggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccat 444  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  44541794 gcttacaggaatctcttaatgttcttgatgatgcgattgatggcatttagcatgggaaagtggaattgtttccgaccatgggaaagtattttttggccat 44541695  T
Q  445 cagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctctccttataactc 544  Q
    |||||| || ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44541694 cagattaaagagaatcaccaatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctctccttataactc 44541595  T
Q  545 actcacccaccacaagctgcctaaattgcaggatcaaaccaactatggataatcatttcaacagcttgaatcacacaaagtgctcccaacattttattct 644  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44541594 actcacctaccacaagctgcctaaattgcaagatcaaaccaactatggat-atcatttcaacagcttgaatcacacaaagtgctcctaacattttattct 44541496  T
Q  645 ctctttccatannnnnnnaattcaagtttcagtgacaaatgggtcacta-ttttctctaaattgaccattgattttagtttgtgttccttaatgaaactc 743  Q
    |||||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44541495 ctctttccatatttttttaattcaagtttcagtgacaaatgggtcactatttttctctaaattgaccattgattttagtttgtgttccttaatgaaactc 44541396  T
Q  744 acagtttttaatttataggaaatcccatgctattttggattttgaattactctgaatattatttc 808  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  44541395 acagtttttaatttataggaaatcccatgctattttggattttgaatttctctggatattatttc 44541331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 390 - 439
Target Start/End: Complemental strand, 29060780 - 29060731
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttta 439  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  29060780 tttagcatgggaaaggggaattgtttcccaccatgggaaagtttttttta 29060731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 24996724 - 24996676
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttt 438  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  24996724 tttagcatgggaaaggggagttgtttcccaccatgggaaagtatttttt 24996676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 42607088 - 42607129
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagt 431  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  42607088 tttagcatgggaaaggggaattgtttcccaccatgggaaagt 42607129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 24995859 - 24995907
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttt 438  Q
    ||||| ||||||||||||| |||||||| ||||| ||||||||||||||    
T  24995859 tttagaatgggaaaggggagttgtttcccaccatgggaaagtatttttt 24995907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 32871181 - 32871134
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagtattttt 437  Q
    ||||||||||||| ||||| |||||||| ||||||||||||| |||||    
T  32871181 tttagcatgggaatggggagttgtttcccaccataggaaagttttttt 32871134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 431
Target Start/End: Complemental strand, 42607853 - 42607812
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagt 431  Q
    |||||||||| ||||||||||||||||| | |||||||||||    
T  42607853 tttagcatggaaaaggggaattgtttcccatcataggaaagt 42607812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 379 - 765
Target Start/End: Complemental strand, 473096 - 472715
Alignment:
Q  379 gattgatggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagta 478  Q
    ||||| |||||||||  ||||||||||| | | |||||| ||||||| |||||||||||||||||||||||| || || | |||||||||||||||| |     
T  473096 gattggtggcatttaatatgggaaagggaagtcgtttcccaccatagaaaagtattttttagccatcagattaaagaggaccactgatcttattataatc 472997  T
Q  479 tgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctctcctt-ataactcactcacccaccacaagctgcctaaattgcagga 577  Q
    |||||||||||||||||| |||||||||||||||| || |||  ||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||    
T  472996 tgcacacactatatcttttccaactttgtcttcaa-ctaacagccatttctctctccttcataactcactcacccaccaccagctgcctaaattgcaaga 472898  T
Q  578 tcaaaccaactatggataatcatttcaacag-cttgaatcacacaaagtgctcccaacattttattctctctttccatannnnnnnaattcaagtttcag 676  Q
    |||||||||||||| || || |||||||||| ||||||||||||  ||||||| ||||||||||||||||||    |||       ||||||||||||||    
T  472897 tcaaaccaactatgaat-attatttcaacagccttgaatcacac--agtgctctcaacattttattctctct----atatttttttaattcaagtttcag 472805  T
Q  677 tgacaaatgggtcacta-ttttctctaaattgaccattgattttagtttgtgttccttaatgaaactcacagtttttaatttataggaaa 765  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||  || |||||||||| ||| ||||||||||    
T  472804 tgacaaatgggtcactatttttctctaaattgaccattaattttagtttgtgttccttaacaaagctcacagtttgtaaattataggaaa 472715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 4789527 - 4789568
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagt 431  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  4789527 tttagcatgggaaaggggagttgtttcccaccatgggaaagt 4789568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 4e-40; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 385 - 525
Target Start/End: Complemental strand, 36272593 - 36272453
Alignment:
Q  385 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcaca 484  Q
    |||||||||||||||||| ||| | |||||||| ||||| |||||||||||||| |||||| |||| || || || ||||||||||||||||| ||||||    
T  36272593 tggcatttagcatgggaatgggaacttgtttcccaccatgggaaagtattttttggccatctgattaaagaggattactgatcttattatagtctgcaca 36272494  T
Q  485 cactatatctttcccaactttgtcttcaacctcacaatcat 525  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  36272493 cactatatctttctcaactttgtcttcaacctcactatcat 36272453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 385 - 525
Target Start/End: Complemental strand, 6768164 - 6768024
Alignment:
Q  385 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcaca 484  Q
    |||||||||||||||||| ||| | || ||||| ||||| |||||||||||||| |||||| |||| || || || ||| ||||||||||||| ||||||    
T  6768164 tggcatttagcatgggaatgggaacttatttcccaccatgggaaagtattttttggccatctgattaaagaggattactaatcttattatagtctgcaca 6768065  T
Q  485 cactatatctttcccaactttgtcttcaacctcacaatcat 525  Q
    || |||||||||| ||||||||||||||||||||| |||||    
T  6768064 cattatatctttctcaactttgtcttcaacctcactatcat 6768024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 532
Target Start/End: Original strand, 37422470 - 37422544
Alignment:
Q  458 atcactgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctc 532  Q
    ||||||| |||||||||||| |||| ||||| |||||||||  ||||| ||||||||||||| | ||| ||||||    
T  37422470 atcactggtcttattatagtctgcaaacactgtatctttccagactttatcttcaacctcactaccatctctctc 37422544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 439
Target Start/End: Complemental strand, 48835138 - 48835089
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttta 439  Q
    |||||||||||||||||||||||||| | ||||| ||||||| |||||||    
T  48835138 tttagcatgggaaaggggaattgttttccaccatgggaaagtttttttta 48835089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 4640535 - 4640582
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagtattttt 437  Q
    |||||||||| ||||||||||||||||| ||||| |||||||| ||||    
T  4640535 tttagcatggtaaaggggaattgtttcccaccatgggaaagtaatttt 4640582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 4641803 - 4641756
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagtattttt 437  Q
    |||||||||||||||||||||||||||| ||||  |||||||| ||||    
T  4641803 tttagcatgggaaaggggaattgtttcccaccaagggaaagtaatttt 4641756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 11031433 - 11031479
Alignment:
Q  385 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagt 431  Q
    ||||||||| |||||||||||||||| |||||| ||||| |||||||    
T  11031433 tggcatttaacatgggaaaggggaatagtttcccaccatgggaaagt 11031479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 431
Target Start/End: Complemental strand, 11032265 - 11032219
Alignment:
Q  385 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagt 431  Q
    ||||||||| |||||||||||||||| |||||| ||||| |||||||    
T  11032265 tggcatttaacatgggaaaggggaatagtttcccaccatgggaaagt 11032219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 431
Target Start/End: Complemental strand, 47334946 - 47334900
Alignment:
Q  385 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagt 431  Q
    |||||||||| |||||||| |||| |||||||| |||||||||||||    
T  47334946 tggcatttagtatgggaaaagggagttgtttcccaccataggaaagt 47334900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 38931321 - 38931362
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagt 431  Q
    ||||||||| |||||||||||||||||| ||||| |||||||    
T  38931321 tttagcatgagaaaggggaattgtttcccaccatgggaaagt 38931362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 431
Target Start/End: Complemental strand, 41884270 - 41884229
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagt 431  Q
    |||||||||| |||||| |||||||||| |||||||||||||    
T  41884270 tttagcatggaaaagggaaattgtttcccaccataggaaagt 41884229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 388 - 525
Target Start/End: Original strand, 23462410 - 23462547
Alignment:
Q  388 catttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacac 487  Q
    |||||||||||| || ||| | |||||| | ||||| |||||||||||||| |||||| || | || || |||||||||||||||||||| |||||||||    
T  23462410 catttagcatggaaatgggaacttgttttctaccatgggaaagtattttttggccatctgactaaagaggatcactgatcttattatagtctgcacacac 23462509  T
Q  488 tatatctttcccaactttgtcttcaacctcacaatcat 525  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  23462510 tatatctttctcaactttgtcttcaacctcactatcat 23462547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 5005464 - 5005509
Alignment:
Q  385 tggcatttagcatgggaaaggggaattgtttccgaccataggaaag 430  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||    
T  5005464 tggcatttagcatgggaaaggggaattgtttcccatcatgggaaag 5005509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 475
Target Start/End: Original strand, 32471941 - 32472031
Alignment:
Q  385 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattata 475  Q
    ||||||||| ||||||||||| | ||  ||||| ||||| ||||||| |||| || |||| ||||| ||| | | ||||||||||||||||    
T  32471941 tggcatttaacatgggaaaggtggatcctttcccaccatgggaaagttttttgtaaccattagattaaaatggaacactgatcttattata 32472031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 476
Target Start/End: Complemental strand, 43743876 - 43743795
Alignment:
Q  395 catgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatag 476  Q
    ||||||||||| ||||  ||||| ||||| ||||| | ||||||| |||||||||||||| | | || |||||||| |||||    
T  43743876 catgggaaaggtgaatcctttcccaccatgggaaacttttttttaaccatcagatttaaagggaacattgatcttactatag 43743795  T

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Target: chr6 (Bit Score: 61; Significance: 9e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 411 - 519
Target Start/End: Complemental strand, 23593960 - 23593852
Alignment:
Q  411 tgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtctt 510  Q
    ||||||| ||||| |||||||||||||| ||  | ||| | || || ||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  23593960 tgtttcccaccatgggaaagtattttttggcggttagactaaagaggatcactgattttattatagtatgcatacactatatctttcccaactttgtctt 23593861  T
Q  511 caacctcac 519  Q
    |||||||||    
T  23593860 caacctcac 23593852  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 390 - 519
Target Start/End: Complemental strand, 8384059 - 8383930
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacacta 489  Q
    ||||||||||||||| ||| |||||||| ||||| | ||| ||||||||  |  | |||||||| || |||  |||||||||||| || |||||||||||    
T  8384059 tttagcatgggaaagtggagttgtttcccaccatggaaaaatattttttgacggttagatttaagaggatcgttgatcttattatggtctgcacacacta 8383960  T
Q  490 tatctttcccaactttgtcttcaacctcac 519  Q
    ||| ||||||||||||||||||||||||||    
T  8383959 tatatttcccaactttgtcttcaacctcac 8383930  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 463 - 519
Target Start/End: Original strand, 8383236 - 8383292
Alignment:
Q  463 tgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcac 519  Q
    ||||||||||||| | | ||||||||||||||||||| |||||||| ||||||||||    
T  8383236 tgatcttattataatctacacacactatatctttccccactttgtcatcaacctcac 8383292  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 498
Target Start/End: Original strand, 24125986 - 24126087
Alignment:
Q  397 tgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatcttt 496  Q
    |||||||||||| |||||||| ||||| |||||||  |||| |||||| |||||||| || | || | || |||||||||| |   |||||||||| |||    
T  24125986 tgggaaaggggagttgtttcccaccatgggaaagttattttcagccattagatttaagaggaacattaattttattatagtctatccacactatattttt 24126085  T
Q  497 cc 498  Q
    ||    
T  24126086 cc 24126087  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 439
Target Start/End: Complemental strand, 33455822 - 33455773
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttta 439  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  33455822 tttagcatgggaaaggggaattgtttcccaccataggaaagtttttttta 33455773  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 49161849 - 49161803
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttt 436  Q
    |||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  49161849 tttagcatgggaaaggggaattgtttcccaccatgggaaagtttttt 49161803  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 417
Target Start/End: Original strand, 26836351 - 26836380
Alignment:
Q  388 catttagcatgggaaaggggaattgtttcc 417  Q
    ||||||||||||||||||||||||||||||    
T  26836351 catttagcatgggaaaggggaattgtttcc 26836380  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 430
Target Start/End: Complemental strand, 41553393 - 41553348
Alignment:
Q  385 tggcatttagcatgggaaaggggaattgtttccgaccataggaaag 430  Q
    ||||||||| ||||||||||| ||||| ||||| ||||||||||||    
T  41553393 tggcatttatcatgggaaaggtgaattatttcccaccataggaaag 41553348  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 43768028 - 43768092
Alignment:
Q  385 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatt 450  Q
    |||||||||||||||||| || || |||||||| ||||| ||||||| ||||||| |||| |||||    
T  43768028 tggcatttagcatgggaatggagagttgtttcccaccatgggaaagt-ttttttaaccattagatt 43768092  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 431
Target Start/End: Complemental strand, 51421716 - 51421675
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagt 431  Q
    ||||||||| |||||||||||||||||| ||||| |||||||    
T  51421716 tttagcatgagaaaggggaattgtttcccaccatgggaaagt 51421675  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 37562302 - 37562343
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagt 431  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  37562302 tttagcatgggaaaggagaattgtttcccaccataggaaagt 37562343  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 532
Target Start/End: Original strand, 6013026 - 6013117
Alignment:
Q  441 ccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctc 532  Q
    |||| ||||| || || ||||||  ||||||||||||||||| ||||  |||||||||  ||||| ||||||||||||| | ||| ||||||    
T  6013026 ccattagattaaagaggatcactagtcttattatagtatgcaaacacggtatctttccagactttatcttcaacctcactaccatctctctc 6013117  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 42345396 - 42345461
Alignment:
Q  385 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatt 450  Q
    |||||||||||||||||| || || |||||||| ||||| ||||||| ||||| | |||| |||||    
T  42345396 tggcatttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattagatt 42345461  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 396 - 438
Target Start/End: Original strand, 34371475 - 34371517
Alignment:
Q  396 atgggaaaggggaattgtttccgaccataggaaagtatttttt 438  Q
    |||||||||||||||||||||| ||||| ||||||| ||||||    
T  34371475 atgggaaaggggaattgtttcccaccatgggaaagtttttttt 34371517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 25970113 - 25970154
Alignment:
Q  390 tttagcatgggaaaggggaattgtttccgaccataggaaagt 431  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  25970113 tttagcatgggaaaggggagttgtttcccaccatgggaaagt 25970154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 39429227 - 39429292
Alignment:
Q  385 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatt 450  Q
    |||||||||||||||||| || || |||||||| ||||| ||||||| ||||| | |||| |||||    
T  39429227 tggcatttagcatgggaatggagagttgtttcctaccatgggaaagtttttttcaaccattagatt 39429292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 498
Target Start/End: Complemental strand, 47377632 - 47377531
Alignment:
Q  397 tgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatcttt 496  Q
    |||||||||||| |||||||| ||||| |||||||  |||| |||||| |||||||| || | || | || |||||||||| |   |||||||||| |||    
T  47377632 tgggaaaggggagttgtttcccaccatgggaaagttattttcagccattagatttaagaggaacattaattttattatagtctatccacactatattttt 47377533  T
Q  497 cc 498  Q
    ||    
T  47377532 cc 47377531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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