View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12391_low_5 (Length: 274)
Name: NF12391_low_5
Description: NF12391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12391_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 15733823 - 15734082
Alignment:
| Q |
1 |
ctaccacaaacacttccagattcatttaatgaaattcctcggcaacaaacacgtgccgaggaacctcaaagtttcaatttcataaacccgagcgacgtga |
100 |
Q |
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| T |
15733823 |
ctaccacaaacacttccagattcatttaatgaaattcctcggcaacaaacacgtgccgaggaacctcgaagtttcaatttcataaacccgagcgacgtga |
15733922 |
T |
|
| Q |
101 |
gtaatgcgattgatgcatcaaagactatccgtctttgttgttcaattatcgtcgctctattggttgttgcatcatatctaggtctctcattgattaagac |
200 |
Q |
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| T |
15733923 |
gtaatgctatcgatgcatcaaagactatccgtctttgttgttcaattatcgtcgctctattggttgttgcatcatatctaggtctctcattgattaagac |
15734022 |
T |
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| Q |
201 |
tgtgataagttttaggccactttacttggttctgcttaccaattcaacatttgttgtttc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15734023 |
tgtgataagttttaggccactttacttggttctgcttaccaattcaacgtttgttgtttc |
15734082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 1582338 - 1582079
Alignment:
| Q |
1 |
ctaccacaaacacttccagattcatttaatgaaattcctcggcaacaaacacgtgccgaggaacctcaaagtttcaatttcataaacccgagcgacgtga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1582338 |
ctaccacaaacacttccagattcatttaatgaaattcctcggcaacaaacacgtgccgaggaacctcgaagtttcaatttcataaacccgagcgacgtga |
1582239 |
T |
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| Q |
101 |
gtaatgcgattgatgcatcaaagactatccgtctttgttgttcaattatcgtcgctctattggttgttgcatcatatctaggtctctcattgattaagac |
200 |
Q |
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| T |
1582238 |
gtaatgctatcgatgcatcaaagactatccgtctttgttgttcaattatcgtcgctctattggttgttgcatcatatctaggtctctcattgattaagac |
1582139 |
T |
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| Q |
201 |
tgtgataagttttaggccactttacttggttctgcttaccaattcaacatttgttgtttc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1582138 |
tgtgataagttttaggccactttacttggttctgcttaccaattcaacgtttgttgtttc |
1582079 |
T |
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