View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12392_low_2 (Length: 488)
Name: NF12392_low_2
Description: NF12392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12392_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 47 - 355
Target Start/End: Complemental strand, 22219338 - 22219030
Alignment:
| Q |
47 |
gcactatgatcactcgggttaattatgtaagctagatgagtagtttcgtgagattggattagttaaacttttgtagtgaatgatccttatgtgatgaatg |
146 |
Q |
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| T |
22219338 |
gcactatgatcacttgggttaattatgtaagctagatgagtagttttatgagattggattagttaaacttttgtagtgaatgatccttatgtgatgaatg |
22219239 |
T |
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| Q |
147 |
catgggccaaaacataccaagataacaagcatgtgaagtttcttgctaatcgttcagccatgtacactctttctttctaaaaggtttgctctcttgtttg |
246 |
Q |
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| T |
22219238 |
catgggccaaaacataccgagataacaagcatgtgaagtttcttgctaatcgttcagccatgtacactctttctttctaaaaggttagctctcttgtttg |
22219139 |
T |
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| Q |
247 |
aaaacctcaagtgtgaagattggtaatattgaaaatggaacagaatccttaaggtcctctaatgaatgtgtttaattttgctatgatatgtctatcatta |
346 |
Q |
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| T |
22219138 |
aaaacctcaagtgtgaagattcgtaatattgaaaatggaacagaatccttaaggtcctctaatgaatatgtttaattttgctatgatatgtctatcatta |
22219039 |
T |
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| Q |
347 |
cctattagt |
355 |
Q |
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||||||||| |
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| T |
22219038 |
cctattagt |
22219030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 33103407 - 33103307
Alignment:
| Q |
45 |
atgcactat-gatcactcgggttaattatgtaagctagatgagtagtttcgtgagattggattagttaaacttttgtagtgaatgatccttatgtgatga |
143 |
Q |
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| T |
33103407 |
atgcactatcgatcacttggattaattatgtaagctagatgactaattt---gagattagattaattaaacttttgtagtgaatgatccttatgtgatga |
33103311 |
T |
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| Q |
144 |
atgc |
147 |
Q |
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|||| |
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| T |
33103310 |
atgc |
33103307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 33125895 - 33125804
Alignment:
| Q |
115 |
ttttgtagtgaatgatccttatgtgatgaatgcatgggccaaaacataccaagataacaagcatgtgaagtttcttgctaatcgttcagcca |
206 |
Q |
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||||||||| |||||||| | |||| ||||| |||||||||| |||| || ||| ||||||||||| ||||| |||||| || |||| |||| |
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| T |
33125895 |
ttttgtagtcaatgatccatttgtgctgaattcatgggccaagacattcccagagaacaagcatgtcaagttccttgctgatggttctgcca |
33125804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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