View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12392_low_3 (Length: 454)
Name: NF12392_low_3
Description: NF12392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12392_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 184 - 418
Target Start/End: Complemental strand, 17283771 - 17283537
Alignment:
| Q |
184 |
tggagaaattgtaaaattcatgatcaaatacacactctaataatcctttatatgaagtaggttatgttaactaactatgattactttactttcaaataaa |
283 |
Q |
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| T |
17283771 |
tggaaaaattgtaaaatttatgatcaaatacacactctaataatcctttatatgaagtaggttatgttaactacctatgattacttgactttcaagtaaa |
17283672 |
T |
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| Q |
284 |
ctatgtaactaggttaatctctgactgactaactcaatcttatccaactaactactaactcaagtaactgaactctaacaacctagtgctaatctaaagt |
383 |
Q |
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| T |
17283671 |
ctatgtaactatgttaatctctgactgactaactcaatcttatccaactaactactaactcaagtaactgaactctaacaacctagtgctaatctaaagt |
17283572 |
T |
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| Q |
384 |
atatagatcatctaagagtaccaacacttatacac |
418 |
Q |
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| T |
17283571 |
atatagatcatctaagagtaccaacacttatacac |
17283537 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 375
Target Start/End: Complemental strand, 34015902 - 34015838
Alignment:
| Q |
311 |
actaactcaatcttatccaactaactactaactcaagtaactgaactctaacaacctagtgctaa |
375 |
Q |
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| T |
34015902 |
actaactcaatcttattcaactaacttctagctcaagtaactaatctctagcaaacttgtgctaa |
34015838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 379
Target Start/End: Original strand, 35987790 - 35987858
Alignment:
| Q |
311 |
actaactcaatcttatccaactaactactaactcaagtaactgaactctaacaacctagtgctaatcta |
379 |
Q |
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| T |
35987790 |
actaactcaatcttattcaattaacttctagctcaaataactaacctctaacaaacttgtgctgatcta |
35987858 |
T |
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