View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12392_low_5 (Length: 327)
Name: NF12392_low_5
Description: NF12392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12392_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 3320989 - 3320690
Alignment:
| Q |
7 |
cagaacctgtgttgtcaaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaact |
106 |
Q |
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| T |
3320989 |
cagaacatgtgttgtcaaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaact |
3320890 |
T |
|
| Q |
107 |
atcaannnnnnnctcagtggttttgtnnnnnnntaccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaa |
206 |
Q |
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| T |
3320889 |
atcaatttttttctcagtggttttgtaaaaaaataccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaa |
3320790 |
T |
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| Q |
207 |
tcagacctgaaaattccttctccaaggggttcaaaaatctctctgaaattttttcctttaccatagttttcaaattttgtgcttgtgatgtgttgcacgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3320789 |
tcagacctgaaaattccttctccaaggggttcaaaaatctctctgaaattttttcctttaccatagttttcaaattttgtgcttgtgatgtgttgcacgt |
3320690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 12176559 - 12176847
Alignment:
| Q |
18 |
ttgtcaaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaactatcaannnnnn |
117 |
Q |
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|||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||| ||||||||| | ||| |||| |||| | |
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| T |
12176559 |
ttgtcaaaggttaacctttgaaaaatatcttgcaaatccacttgcatcccttttttacaagcatgatcaagaaatacaagaagaccactaaatagttttt |
12176658 |
T |
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| Q |
118 |
nctcagtggttttgtnnnnnnntaccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaatcagacctgaa |
217 |
Q |
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| T |
12176659 |
tctcaatggttttgtgaataaatacctgaaaactttccttcttgaaaattgaatgaagtagtgttctgttgtacttccaaatgtgagaatcagacctaaa |
12176758 |
T |
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| Q |
218 |
aattccttctccaaggggttcaaaaatctctctgaaattttttcctttaccatagttttcaaattttgtgcttgtgatgtgttgcacgt |
306 |
Q |
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| T |
12176759 |
aattccatctccaaggatttcaaaaatctcgctgaaatcgtttcctttcccatagttttcgaattttgtgcttgtgatgtgttgcacgt |
12176847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 12165023 - 12165322
Alignment:
| Q |
7 |
cagaacctgtgttgtcaaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaact |
106 |
Q |
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|||||| | |||||||||||||||||||| ||||| |||||||||||| ||||||| || |||||| |||||| ||||||||| | ||| ||| | | |
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| T |
12165023 |
cagaacatatgttgtcaaaggttaacctttgaaaaatatcttgcaaatccacttgcaccccatttttagaagcatgatcaagaaatacaagaagatagtt |
12165122 |
T |
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| Q |
107 |
atcaannnnnnnctcagtggttttgtnnnnnnntaccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaa |
206 |
Q |
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| || |||| |||||| | ||||| ||||||| |||||||||| | |||||||||||| |||||||||||||||| | || |
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| T |
12165123 |
acaaatttttttctcaacggttttttgaataaatacctgaaaatttccctgcttgaaaattgaatgaagtagctttctgttgtacttccaaatgtgtgaa |
12165222 |
T |
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| Q |
207 |
tcagacctgaaaattccttctccaaggggttcaaaaatctctctgaaattttttcctttaccatagttttcaaattttgtgcttgtgatgtgttgcacgt |
306 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||| |
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| T |
12165223 |
tcagacctaaaaattccttctccaagaacttcaaaaatctctctgaaatcatttcctttcccgtagttttcgaattttgtgcttgtgatgtgttgcacgt |
12165322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 36668887 - 36669177
Alignment:
| Q |
16 |
tgttgtcaaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaactatcaannnn |
115 |
Q |
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|||| ||||| ||||||||| ||||||||||||||| || ||||||| |||||||||||||||| ||||||||||| ||| ||||||||| || |
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| T |
36668887 |
tgttatcaaatgttaacctttgaaaaacatcttgcaagtcaacttgcatcccttttttacaagcatgatcaagaaacataagaagacaactagaaatttt |
36668986 |
T |
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| Q |
116 |
nnnctcagtggttttgtnnnnnnntaccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaatcagacctg |
215 |
Q |
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|||| ||||||||| |||||||||| ||||||||||||| | |||||||| || ||||| ||||||||||| | | ||||||||||| |
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| T |
36668987 |
tttctcaatggttttgtgaagaaataccttaaaactttcctgcttgaaaatggaatgaaggagtgttctattgtacttccaagtgtgagaatcagacctg |
36669086 |
T |
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| Q |
216 |
aaaattccttctccaaggggttcaaaaatctctctgaaattttttcctttaccatagttttcaaattttgtgcttgtgatgtgttgcacgt |
306 |
Q |
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||||| || ||||||||| |||||| |||||| |||| | |||||||| || ||||||||||| |||| |||||||| |||||||||| |
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| T |
36669087 |
aaaatcccatctccaaggacttcaaatatctctgtgaattcatttcctttcccgtagttttcaaaacttgtacttgtgatatgttgcacgt |
36669177 |
T |
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