View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12393_high_3 (Length: 279)
Name: NF12393_high_3
Description: NF12393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12393_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 31729934 - 31730186
Alignment:
| Q |
14 |
atcattaccaaccaaaaagcaaacaaacaaattgcatattt-----gattagagaccnnnnnnnttgtcaacatgtttgattcctctagacctctaccga |
108 |
Q |
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| T |
31729934 |
atcattaccaaccaaaaagcaaacaaacaaattgcatatttaatttgattagagaccaaaaaaattgtcaacatgtttgattcctctagacctctaccga |
31730033 |
T |
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| Q |
109 |
aacaaatttcccttaaactaaatatttgttgaaaattgatattatctcaatgtttaactttttgttgatcatcactcacttattcctaaattctcatccc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31730034 |
aacaaatttcccttaaactaaatatttgttgaaaattgatattatctcaatgtttaactttttgttgatcatcactcacttattcctaaattctcatccc |
31730133 |
T |
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| Q |
209 |
attaacggtaccactcatcctcgtatttctaccgcggtaaagttatctcaatt |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31730134 |
attaacggtaccactcatcctcgtatttctaccgcggtaaagttatctcaatt |
31730186 |
T |
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