View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12393_low_1 (Length: 437)
Name: NF12393_low_1
Description: NF12393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12393_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Complemental strand, 42453771 - 42453366
Alignment:
| Q |
14 |
ctgtgttacaactcttccagctgaaactcttaatcgatcatatctatgcatcaaaatgatgtcttcgaatttggatggcattggatcaaactcttcttgc |
113 |
Q |
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| T |
42453771 |
ctgtgttacaactcttccagctgaaactcttaatcgatcatatctatgcatcaaaatgatgtcttcgaatttggatggcattggatcaaactcttcttgc |
42453672 |
T |
|
| Q |
114 |
aattcatcttcacttgctgtatgcacatgagacaaatgcaaatctgcatgggataatgtttttggctttatttgaaattccagcagcatatggactataa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42453671 |
aattcatcttcacttgctgtatgcacatgagacaaatgcaaatctgcatgggataatgtttttggctttatttgaaattcctgcagcatatggactataa |
42453572 |
T |
|
| Q |
214 |
gagcaagaaatattgctggcaacaacgattgaggcagaaagaacaagacgacgagcaacaagtgagctataattggtgaaacaagatctttccacttgcg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453571 |
gagcaagaaatattgctggcaacaacgattgaggcagaaagaacaagacgacgagcaacaagtgagctataattggtgaaacaagatctttccacttgcg |
42453472 |
T |
|
| Q |
314 |
tacgtcatcaaaataagtgtaaataccaaccaagcaatttagaaagacgttgatcctctcaaaatcagctttacatcttctcatactccacacgatttca |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453471 |
tacgtcatcaaaataagtgtaaataccaaccaagcaatttagaaagacgttaatcctctcaaaatcagctttacatcttctcatactccacacgatttca |
42453372 |
T |
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| Q |
414 |
cgtgaa |
419 |
Q |
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|||||| |
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| T |
42453371 |
cgtgaa |
42453366 |
T |
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