View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12393_low_3 (Length: 310)
Name: NF12393_low_3
Description: NF12393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12393_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 8357507 - 8357783
Alignment:
| Q |
18 |
gcagcataaggaagtttgtggcaagactgaaccaatatttacaatagaaggtatttactagagtcccttgtcatacatggcnnnnnnntagtcccttgtt |
117 |
Q |
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| T |
8357507 |
gcagcataaggaagtttgtggcaagactgaaccaatatttacaatagaaggtatttactagagtcccttgtcatacatggcaaaaaaatagtcccttgtt |
8357606 |
T |
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| Q |
118 |
ggtggaacactataagttatgcattcttaacttacagttaaatttgattttacatgagtatatttttattgacacttacattctattattttctcatatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| |
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| T |
8357607 |
ggtggaacactataagttatgcattcttaacttacagttaaatttgattttacatgagtatatttttatcgacacttactttctattgttttctcatatt |
8357706 |
T |
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| Q |
218 |
ttgtttggatgaaaaacaaatgttctaatagtaacttgcaattattagatattgatgatatgaaatggtgaaaatat |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357707 |
ttgtttggatgaaaaacaaatgttctaatagtaacttgcaattattagatattgatgatatgaaatggtgaaaatat |
8357783 |
T |
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