View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12394_high_1 (Length: 1056)

Name: NF12394_high_1
Description: NF12394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12394_high_1
NF12394_high_1
[»] chr2 (15 HSPs)
chr2 (710-1044)||(30804471-30804805)
chr2 (199-345)||(30804294-30804440)
chr2 (19-133)||(30804124-30804238)
chr2 (261-397)||(31063050-31063186)
chr2 (256-341)||(12238204-12238289)
chr2 (278-345)||(15967967-15968034)
chr2 (261-311)||(4549031-4549081)
chr2 (272-345)||(8752612-8752684)
chr2 (244-345)||(9613761-9613861)
chr2 (285-345)||(27863873-27863933)
chr2 (255-345)||(5946542-5946632)
chr2 (266-320)||(16449826-16449879)
chr2 (289-343)||(42139530-42139584)
chr2 (266-315)||(2346848-2346897)
chr2 (356-393)||(17487935-17487971)
[»] scaffold0010 (1 HSPs)
scaffold0010 (261-345)||(166742-166826)
[»] chr4 (18 HSPs)
chr4 (261-393)||(47789350-47789482)
chr4 (261-313)||(2103177-2103229)
chr4 (257-312)||(30070330-30070385)
chr4 (266-345)||(30802431-30802509)
chr4 (285-345)||(39033639-39033699)
chr4 (285-345)||(41173918-41173978)
chr4 (261-312)||(41758690-41758741)
chr4 (263-345)||(34812656-34812738)
chr4 (287-345)||(44555579-44555637)
chr4 (280-342)||(52831598-52831660)
chr4 (284-402)||(24418111-24418227)
chr4 (264-343)||(21501772-21501851)
chr4 (642-681)||(27611812-27611851)
chr4 (641-680)||(41173951-41173990)
chr4 (272-339)||(52327445-52327512)
chr4 (289-344)||(52986367-52986422)
chr4 (292-345)||(17425588-17425641)
chr4 (416-453)||(23051683-23051720)
[»] chr1 (21 HSPs)
chr1 (268-408)||(31117585-31117723)
chr1 (273-345)||(1714030-1714102)
chr1 (273-345)||(3160992-3161064)
chr1 (246-345)||(7460256-7460354)
chr1 (274-390)||(20791808-20791924)
chr1 (261-340)||(31795331-31795410)
chr1 (266-397)||(32359275-32359401)
chr1 (891-947)||(42393035-42393091)
chr1 (272-345)||(35272478-35272552)
chr1 (272-337)||(5923865-5923930)
chr1 (272-345)||(21516499-21516572)
chr1 (284-345)||(30173401-30173462)
chr1 (272-345)||(32348409-32348482)
chr1 (285-345)||(3949641-3949701)
chr1 (641-681)||(32348441-32348481)
chr1 (289-345)||(35058688-35058744)
chr1 (261-312)||(2060891-2060942)
chr1 (266-341)||(28870456-28870531)
chr1 (272-311)||(42747731-42747770)
chr1 (285-339)||(32602949-32603003)
chr1 (286-315)||(38321978-38322007)
[»] chr5 (12 HSPs)
chr5 (261-377)||(34640150-34640266)
chr5 (285-341)||(41892773-41892829)
chr5 (275-346)||(9005330-9005401)
chr5 (266-345)||(31806577-31806656)
chr5 (273-345)||(31677297-31677369)
chr5 (618-681)||(6462217-6462280)
chr5 (429-483)||(18336405-18336459)
chr5 (273-315)||(31812163-31812205)
chr5 (273-345)||(1015046-1015118)
chr5 (270-312)||(6462237-6462279)
chr5 (266-315)||(32815823-32815872)
chr5 (266-315)||(41662481-41662530)
[»] chr8 (10 HSPs)
chr8 (272-345)||(2111018-2111091)
chr8 (264-345)||(43408677-43408758)
chr8 (354-408)||(12525110-12525164)
chr8 (272-326)||(21367080-21367133)
chr8 (263-345)||(28947300-28947382)
chr8 (285-345)||(35764728-35764788)
chr8 (634-681)||(12524589-12524636)
chr8 (641-680)||(29861519-29861558)
chr8 (279-317)||(12367618-12367656)
chr8 (296-345)||(8407590-8407639)
[»] chr7 (10 HSPs)
chr7 (287-345)||(28175449-28175507)
chr7 (261-341)||(2525296-2525376)
chr7 (266-341)||(31740590-31740664)
chr7 (266-337)||(44235299-44235370)
chr7 (300-402)||(883829-883930)
chr7 (300-402)||(1243158-1243259)
chr7 (289-344)||(3837088-3837143)
chr7 (266-345)||(13438306-13438385)
chr7 (627-673)||(44235292-44235338)
chr7 (356-397)||(34837135-34837176)
[»] chr3 (11 HSPs)
chr3 (267-345)||(37334635-37334713)
chr3 (273-341)||(35682648-35682716)
chr3 (272-346)||(9780485-9780559)
chr3 (289-400)||(31534411-31534521)
chr3 (261-339)||(42603825-42603903)
chr3 (255-312)||(35696647-35696704)
chr3 (641-681)||(9198039-9198079)
chr3 (266-345)||(18084864-18084942)
chr3 (647-681)||(32582629-32582663)
chr3 (260-345)||(32582598-32582682)
chr3 (267-312)||(36618121-36618166)
[»] chr6 (4 HSPs)
chr6 (278-345)||(1288441-1288508)
chr6 (272-345)||(29052700-29052773)
chr6 (261-312)||(9749789-9749840)
chr6 (272-325)||(14755711-14755764)
[»] scaffold0027 (1 HSPs)
scaffold0027 (624-681)||(8111-8168)


Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-179; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 710 - 1044
Target Start/End: Original strand, 30804471 - 30804805
Alignment:
Q  710 aaaatataacgctttaagctagaaggtacttgaagtatcttatcaaaatatgttttgtaagctattgaaaataagctataaactagtgagaaatgactgc 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30804471 aaaatataacgctttaagctagaaggtacttgaagtatcttatcaaaatatgttttgtaagctattgaaaataagctataaactagtgagaaatgactgc 30804570  T
Q  810 tatcaaacaagactttttgtcacatgagcttatagcttattctgcttgccaaacaaaccctaaattagaattagtcgtgattagttggaagttggttgta 909  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  30804571 tatcaaacaagactttttgtcacatgagcttatagcttattctgcttgccaaacaaaccctaaagtagaattagtcgtgattagttagaagttggttgta 30804670  T
Q  910 ttagttatactctatgatcactatataaggtgcatcctcactgtatcaacttcgtgtatcaaattcaaaatcaatctttctatcagttttatatcttgct 1009  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30804671 ttagttatactctatgatcactatataaggtgcatcctcattgtatcaacttcgtgtatcaaattcaaaatcaatctttctatcatttttatatcttgct 30804770  T
Q  1010 ttattttagttctacaattattctcgacacaggtt 1044  Q
    |||||||||||||||||||||||||||||||||||    
T  30804771 ttattttagttctacaattattctcgacacaggtt 30804805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 199 - 345
Target Start/End: Original strand, 30804294 - 30804440
Alignment:
Q  199 tgtactttggctcagttttgttaaaaataggggatgcttgatgaattagcttaaagtggatgagcttatagcagataagctaactaattgaatttgtagt 298  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30804294 tgtactttggctcagtttggttaaaaataggggatgcttgataaattagcttaaagtggatgagcttatagcagataagctaactaattgaatttgtagt 30804393  T
Q  299 gtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||| ||||||||| || || || ||| ||| || ||||||||||||    
T  30804394 gtttcgtaaaattagcggttgaactagattataagtatgaaatgaca 30804440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 30804124 - 30804238
Alignment:
Q  19 catccgacttacttcctcggtcaggttggtagataaatatagttgaatattaattacaattagaatattgtttaaagtagcttacgaaattgttttgatt 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30804124 catccgacttacttcctcggtcaggttggtagataaatattgttcaatattaattacaattagaatattgtttaaagtagcttacgaaatagttttgatt 30804223  T
Q  119 agttacaatatggtg 133  Q
    |||||||||||||||    
T  30804224 agttacaatatggtg 30804238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 397
Target Start/End: Complemental strand, 31063186 - 31063050
Alignment:
Q  261 agcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgacacnnnnnnntgtgcat 360  Q
    |||| ||||| ||||| |||||  ||||||||||||||||||| ||| |||| || || |||||  ||| |||||||||||||||        ||| |||    
T  31063186 agctgatagcggataaactaacagattgaatttgtagtgtttgataagattagcggttgaagtaatttataaatatgaaatgacataagaaaatgtacat 31063087  T
Q  361 ttaattaatatttatttattttaattaagattgtagg 397  Q
    ||||||||||||||||  ||| |||||||||||||||    
T  31063086 ttaattaatatttattcttttcaattaagattgtagg 31063050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 12238204 - 12238289
Alignment:
Q  256 ggatgagcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaat 341  Q
    ||||||||||||| |||||||||||| | |||||||||||||||||| ||||||||| |  ||||| || |||| | |||||||||    
T  12238204 ggatgagcttataacagataagctaattgattgaatttgtagtgttttgtaaaattagcagttaaattaacttatatatatgaaat 12238289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 15968034 - 15967967
Alignment:
Q  278 ctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||||||| ||||||||||| |||||||||||| || || || ||||||| |||||||||||||||    
T  15968034 ctaactaattcaatttgtagtgcttggtaaaattagcggttgaactagcttataaatatgaaatgaca 15967967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 4549081 - 4549031
Alignment:
Q  261 agcttatagcagataagctaactaattgaatttgtagtgtttggtaaaatt 311  Q
    |||| ||| |||||||||||||| |||||||||||| ||||||||||||||    
T  4549081 agctaataacagataagctaactcattgaatttgtattgtttggtaaaatt 4549031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 8752684 - 8752612
Alignment:
Q  272 gataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||||||||||||||||||||||| |||||||||||   |  || || ||||||| |||||||||||||||    
T  8752684 gataagctaactaattgaatttgtagt-tttggtaaaatctgcatttgaattagcttataaatatgaaatgaca 8752612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 345
Target Start/End: Complemental strand, 9613861 - 9613761
Alignment:
Q  244 ttagcttaaagtggatgagcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatga 343  Q
    |||||||| || ||||||| || ||||  ||||||||||||||||||||| || ||||||||||||| || |  | || || |||| |||||||||||||    
T  9613861 ttagcttatagcggatgagttt-tagcgaataagctaactaattgaatttatattgtttggtaaaatcaatggctgaactatcttataaatatgaaatga 9613763  T
Q  344 ca 345  Q
    ||    
T  9613762 ca 9613761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 27863933 - 27863873
Alignment:
Q  285 attgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||||||||||||||| |||||||| || || | |||||||| |||| ||||||||||    
T  27863933 attgaatttgtagtgtttgataaaattaccggttgaggtagcttataaatgtgaaatgaca 27863873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 5946542 - 5946632
Alignment:
Q  255 tggatgagcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||| |||||| | |||||||||||| ||||||| ||||||| || || ||||||    || |||||||||  |||||||||||||||    
T  5946542 tggatgaacttataccggataagctaactgattgaatatgtagtgcttagtcaaattagttgttgaagtagcttgtaaatatgaaatgaca 5946632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 16449826 - 16449879
Alignment:
Q  266 atagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaa 320  Q
    |||||||||| |||||||  |||||||| || |||||||||||||||||||||||    
T  16449826 atagcagataggctaactggttgaattt-taatgtttggtaaaattaacgattaa 16449879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 42139584 - 42139530
Alignment:
Q  289 aatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatga 343  Q
    |||||||||||||||||||||||| |  || || ||||||| |||||||||||||    
T  42139584 aatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaaatga 42139530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 2346848 - 2346897
Alignment:
Q  266 atagcagataagctaactaattgaatttgtagtgtttggtaaaattaacg 315  Q
    ||||| |||||| ||||| |||| ||||||| ||||||||||||||||||    
T  2346848 atagccgataagttaactgattggatttgtaatgtttggtaaaattaacg 2346897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 17487935 - 17487971
Alignment:
Q  356 tgcatttaattaatatttatttattttaattaagattg 393  Q
    |||||||||||||||||||||| |||||||||||||||    
T  17487935 tgcatttaattaatatttattt-ttttaattaagattg 17487971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 261 - 345
Target Start/End: Complemental strand, 166826 - 166742
Alignment:
Q  261 agcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||||||| || || || ||||||| |||||||||||||||    
T  166826 agcttatagcaaataagctagctgattgaatttgtagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgaca 166742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 261 - 393
Target Start/End: Original strand, 47789350 - 47789482
Alignment:
Q  261 agcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgacacnnnnnnntgtgcat 360  Q
    |||| ||||| |||||||||||| ||||| |||||||||||||||||||||| || || |||| ||||  ||||| ||||||||         |||||||    
T  47789350 agctgatagcggataagctaactgattgattttgtagtgtttggtaaaattagcggttgaagttgcttctaaatacgaaatgacctaaaatattgtgcat 47789449  T
Q  361 ttaattaatatttatttattttaattaagattg 393  Q
    ||||||||||||||||| ||| |||||||||||    
T  47789450 ttaattaatatttatttctttcaattaagattg 47789482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 2103177 - 2103229
Alignment:
Q  261 agcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaa 313  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  2103177 agcttatagcagataagctagcttattgaatttgtagtgtttggtaaaattaa 2103229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 30070385 - 30070330
Alignment:
Q  257 gatgagcttatagcagataagctaactaattgaatttgtagtgtttggtaaaatta 312  Q
    |||||||| ||||  ||||||||| |||||||||||||||||||||||||||||||    
T  30070385 gatgagctcatagtggataagctagctaattgaatttgtagtgtttggtaaaatta 30070330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 30802509 - 30802431
Alignment:
Q  266 atagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||| |||||| || || ||||||||||||||||||||||||||| |||||| || || |||| |||||||||||||||    
T  30802509 atagcggataagttagcttattgaatttgtagtgtttggtaaaatt-acgattgaattaacttataaatatgaaatgaca 30802431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 39033699 - 39033639
Alignment:
Q  285 attgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||||||||||||||| |||||||| || ||||| || |||| |||||||||||||||    
T  39033699 attgaatttgtagtgtttgataaaattatcggttaaactaacttaaaaatatgaaatgaca 39033639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 41173978 - 41173918
Alignment:
Q  285 attgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||||||||| ||||||||||||||| ||||| || ||||||  |||||||||||||||    
T  41173978 attgaatttgtattgtttggtaaaattatcgattgaactagcttgtaaatatgaaatgaca 41173918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 41758741 - 41758690
Alignment:
Q  261 agcttatagcagataagctaactaattgaatttgtagtgtttggtaaaatta 312  Q
    ||||| |||||||||| ||||| |||||||||||||||||| ||||||||||    
T  41758741 agcttgtagcagataaactaacaaattgaatttgtagtgttcggtaaaatta 41758690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 263 - 345
Target Start/End: Original strand, 34812656 - 34812738
Alignment:
Q  263 cttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||||| ||||||||| || |||||||||| ||||||| ||||||||   | || || ||||||| |||||||||||||||    
T  34812656 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgaca 34812738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 287 - 345
Target Start/End: Original strand, 44555579 - 44555637
Alignment:
Q  287 tgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||| |||||||||||||||||||| || ||||| || |||| |||||||||||||||    
T  44555579 tgaatctgtagtgtttggtaaaattagcggttaaactaccttataaatatgaaatgaca 44555637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 52831660 - 52831598
Alignment:
Q  280 aactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatg 342  Q
    |||| ||||||||||||| ||| |||||||| | ||||| |||||||||| ||||||||||||    
T  52831660 aacttattgaatttgtagagttcggtaaaatcagcgattgaagtagcttataaatatgaaatg 52831598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 402
Target Start/End: Original strand, 24418111 - 24418227
Alignment:
Q  284 aattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgacacnnnnnnntgtgcatttaattaatatttatttatttta 383  Q
    ||||||||||||||||||||||||| |||    || |||||||||| |||||||||||||||        |  ||||||||||||||||||||| ||| |    
T  24418111 aattgaatttgtagtgtttggtaaa-ttagttgttcaagtagcttataaatatgaaatgacataaaaaagtaagcatttaattaatatttattt-tttaa 24418208  T
Q  384 attaagattgtaggagtaa 402  Q
    |||||||||| ||| ||||    
T  24418209 attaagattgcaggggtaa 24418227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 21501851 - 21501772
Alignment:
Q  264 ttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatga 343  Q
    ||||||| ||||| ||| || ||| |||| ||||||||||||| ||||| || ||||| ||||||| || ||||||||||    
T  21501851 ttatagcggataaactagctgattaaattcgtagtgtttggtagaattagcggttaaactagcttataagtatgaaatga 21501772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 681
Target Start/End: Original strand, 27611812 - 27611851
Alignment:
Q  642 taagttagttgattgaatttgtagtgtttggtcaaattag 681  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  27611812 taagctagttgattgaatttgtagtgtttggtaaaattag 27611851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 680
Target Start/End: Complemental strand, 41173990 - 41173951
Alignment:
Q  641 ataagttagttgattgaatttgtagtgtttggtcaaatta 680  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  41173990 ataagttagttgattgaatttgtattgtttggtaaaatta 41173951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 52327512 - 52327445
Alignment:
Q  272 gataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaa 339  Q
    ||||||||| ||  ||||||||||||||||||||||||||| |  || || ||||||| |||||||||    
T  52327512 gataagctagctggttgaatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaa 52327445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 344
Target Start/End: Original strand, 52986367 - 52986422
Alignment:
Q  289 aatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgac 344  Q
    |||||||||||| ||||||||||| || || |||||||||  ||||||||||||||    
T  52986367 aatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgac 52986422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 17425588 - 17425641
Alignment:
Q  292 ttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||||||||||||||||||  | || ||||| |||| |||||||||||||||    
T  17425588 ttgtagtgtttggtaaaattagtggttgaagtaacttataaatatgaaatgaca 17425641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 416 - 453
Target Start/End: Original strand, 23051683 - 23051720
Alignment:
Q  416 tacttgaattagcttatcacaaaccgctgtaacctcat 453  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  23051683 tacttgaattagcttatcacaaaccgctataaactcat 23051720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 268 - 408
Target Start/End: Original strand, 31117585 - 31117723
Alignment:
Q  268 agcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgacacnnnnnnntgtgcatttaatta 367  Q
    |||| |||||||| || ||||||||||||||||||| |||||||| ||||| || |||| || |||||||||||||||        |||  |||||||||    
T  31117585 agcaaataagctagctgattgaatttgtagtgtttgataaaattagcgattgaaatagcatataaatatgaaatgaca--aaaaaatgtatatttaatta 31117682  T
Q  368 atatttatttattttaattaagattgtaggagtaagattga 408  Q
    |||||||||| ||| ||||||||||||||| |||| |||||    
T  31117683 atatttatttttttcaattaagattgtaggggtaaaattga 31117723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 1714030 - 1714102
Alignment:
Q  273 ataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||||||| ||||||||||||||||||||||||||||||  || |||||| ||| |||||||||||||||    
T  1714030 ataagctaactgattgaatttgtagtgtttggtaaaattaaccgttgaagtagtttataaatatgaaatgaca 1714102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 3161064 - 3160992
Alignment:
Q  273 ataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||||| || ||||||||||||||||||||||||||||||| || || |||| || |||||||||||||||    
T  3161064 ataagctagctgattgaatttgtagtgtttggtaaaattaacgtttgaactagcatataaatatgaaatgaca 3160992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 345
Target Start/End: Complemental strand, 7460354 - 7460256
Alignment:
Q  246 agcttaaagtggatgagcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||| ||||||||||||||| | ||||||||||  | |||||||||||||||||| ||||| ||| || ||||| ||||||| | |||||||||||||    
T  7460354 agcttatagtggatgagcttatggaagataagctagatgattgaatttgtagtgttt-gtaaacttagcggttaaactagcttatatatatgaaatgaca 7460256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 390
Target Start/End: Original strand, 20791808 - 20791924
Alignment:
Q  274 taagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgacacnnnnnnntgtgcatttaattaatattt 373  Q
    ||||||| |||| |||||||||||||||||||||||||  ||||| |||||||||| |||| |||||  ||||       ||| ||||||||||||||||    
T  20791808 taagctagctaactgaatttgtagtgtttggtaaaattggcgattgaagtagcttataaatgtgaaaaaacacaaaaaaatgttcatttaattaatattt 20791907  T
Q  374 atttattttaattaaga 390  Q
    |||| ||  ||||||||    
T  20791908 atttcttccaattaaga 20791924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 31795331 - 31795410
Alignment:
Q  261 agcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaa 340  Q
    |||| ||||| ||||| || ||||||||||||||||||||||||||||| ||||| || || ||||||| ||||||||||    
T  31795331 agctgatagcggataaactgactaattgaatttgtagtgtttggtaaaactaacggttgaactagcttataaatatgaaa 31795410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 266 - 397
Target Start/End: Complemental strand, 32359401 - 32359275
Alignment:
Q  266 atagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagctta-caaatatgaaatgacacnnnnnnntgtgcatttaa 364  Q
    ||||||||||| ||| || |||||||||||| ||||||||||||||| || || ||||||||||  ||| |||||||||||        |||||||||||    
T  32359401 atagcagataaactagctgattgaatttgtaatgtttggtaaaattagcgtttgaagtagcttataaaagatgaaatgaca---aaaaatgtgcatttaa 32359305  T
Q  365 ttaatatttatttattttaattaagattgtagg 397  Q
    |||||||   ||| || ||||||||||||||||    
T  32359304 ttaatat---ttttttctaattaagattgtagg 32359275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 891 - 947
Target Start/End: Original strand, 42393035 - 42393091
Alignment:
Q  891 tagttggaagttggttgtattagttatactctatgatcactatataaggtgcatcct 947  Q
    ||||| |||||||||| ||||||||||||  || |||||||||||||||||||||||    
T  42393035 tagttagaagttggttatattagttatacgttaggatcactatataaggtgcatcct 42393091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 35272478 - 35272552
Alignment:
Q  272 gataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagctt-acaaatatgaaatgaca 345  Q
    ||||||||| || |||||||||||||||||| ||||||||| || || ||||| ||| | |||||||||||||||    
T  35272478 gataagctagctgattgaatttgtagtgtttagtaaaattatcggttgaagtatcttaaaaaatatgaaatgaca 35272552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 5923930 - 5923865
Alignment:
Q  272 gataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatg 337  Q
    ||||||||| || ||||||||| ||||||||||||||||||| | || || ||||||| |||||||    
T  5923930 gataagctagctgattgaatttttagtgtttggtaaaattaatggttgaactagcttataaatatg 5923865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 21516499 - 21516572
Alignment:
Q  272 gataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||||| || ||||||||||| ||||||||||||||||  | || || ||||||  |||||||||||||||    
T  21516499 gataagctagctgattgaatttgttgtgtttggtaaaattagtggttgaaatagcttttaaatatgaaatgaca 21516572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 30173401 - 30173462
Alignment:
Q  284 aattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||||||||| |||||| |||||||| || || |||||| ||| |||||||||||||||    
T  30173401 aattgaatttgtaatgtttgttaaaattagcggttgaagtagtttataaatatgaaatgaca 30173462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 32348482 - 32348409
Alignment:
Q  272 gataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||||||  | |||||||||||||||||||||||||||| || || |  ||||||| |||| ||||||||||    
T  32348482 gataagctagttgattgaatttgtagtgtttggtaaaattagcggttgagctagcttataaatttgaaatgaca 32348409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 3949641 - 3949701
Alignment:
Q  285 attgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||||||||||||||||||||||||| || || || ||  ||| |||||||||||||||    
T  3949641 attgaatttgtagtgtttggtaaaattagcgtttgaactaatttataaatatgaaatgaca 3949701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 641 - 681
Target Start/End: Complemental strand, 32348481 - 32348441
Alignment:
Q  641 ataagttagttgattgaatttgtagtgtttggtcaaattag 681  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  32348481 ataagctagttgattgaatttgtagtgtttggtaaaattag 32348441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 35058744 - 35058688
Alignment:
Q  289 aatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||||||||||||||||||||| || || || || |||| |||||||||||||||    
T  35058744 aatttgtagtgtttggtaaaattagcggttgaactaccttataaatatgaaatgaca 35058688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 2060891 - 2060942
Alignment:
Q  261 agcttatagcagataagctaactaattgaatttgtagtgtttggtaaaatta 312  Q
    |||| ||||| |||||||||| || ||||||||||| |||||||||||||||    
T  2060891 agctcatagcggataagctaattagttgaatttgtattgtttggtaaaatta 2060942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 28870456 - 28870531
Alignment:
Q  266 atagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaat 341  Q
    ||||| |||||||||  | ||||||||| ||||||||||||||||||||  || || ||||||| ||| |||||||    
T  28870456 atagcggataagctagtttattgaatttttagtgtttggtaaaattaacagttgaactagcttataaaaatgaaat 28870531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 42747770 - 42747731
Alignment:
Q  272 gataagctaactaattgaatttgtagtgtttggtaaaatt 311  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  42747770 gataagctagttaattgaatttgtagtgtttggtaaaatt 42747731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 32603003 - 32602949
Alignment:
Q  285 attgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaa 339  Q
    |||||||||||||||||| |||||||||  | || |||||||||| |||||||||    
T  32603003 attgaatttgtagtgtttagtaaaattagtggttgaagtagcttataaatatgaa 32602949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 38321978 - 38322007
Alignment:
Q  286 ttgaatttgtagtgtttggtaaaattaacg 315  Q
    ||||||||||||||||||||||||||||||    
T  38321978 ttgaatttgtagtgtttggtaaaattaacg 38322007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 34640266 - 34640150
Alignment:
Q  261 agcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgacacnnnnnnntgtgcat 360  Q
    |||| ||||| ||||||||| || |||||||||||| |||||||||||||||  | |||  |||||||| |||||||||||||||        |||||||    
T  34640266 agctgatagcggataagctagcttattgaatttgtaatgtttggtaaaattagtggttattgtagcttataaatatgaaatgacataaaaaattgtgcat 34640167  T
Q  361 ttaattaatatttattt 377  Q
    | |||||||||||||||    
T  34640166 taaattaatatttattt 34640150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 41892773 - 41892829
Alignment:
Q  285 attgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaat 341  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||    
T  41892773 attgaatttgtagtgtttggtataattaacggttaaactagcttataaatatgaaat 41892829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 275 - 346
Target Start/End: Complemental strand, 9005401 - 9005330
Alignment:
Q  275 aagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgacac 346  Q
    ||||||||| |||||||||||||||||| ||| |||||||  || |||||||||| || |||||||||||||    
T  9005401 aagctaactgattgaatttgtagtgtttagtacaattaacagttgaagtagcttaaaagtatgaaatgacac 9005330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 31806577 - 31806656
Alignment:
Q  266 atagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||| ||||||||| |  |||||||||||| |||||||||||||||| |||| || || |||| |||||||||||||||    
T  31806577 atagcggataagctagcagattgaatttgtattgtttggtaaaattaaggattgaactatcttataaatatgaaatgaca 31806656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 31677369 - 31677297
Alignment:
Q  273 ataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||||| || |||||||||  |||||||||||||| || || || || |||||||||||||||||||||||    
T  31677369 ataagctagctgattgaatttacagtgtttggtaaaactagcggttgaactagcttacaaatatgaaatgaca 31677297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 618 - 681
Target Start/End: Original strand, 6462217 - 6462280
Alignment:
Q  618 ttatactttatagttgataacatataagttagttgattgaatttgtagtgtttggtcaaattag 681  Q
    ||||| ||||||||||||| || ||||| ||| |||||||||||||||||||| || |||||||    
T  6462217 ttatagtttatagttgataccagataagctagctgattgaatttgtagtgtttagtaaaattag 6462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 18336459 - 18336405
Alignment:
Q  429 ttatcacaaaccgctgtaacctcatgtaaaagtaacagttaccaaacaggtcttt 483  Q
    |||||| |||||||| ||| | ||||||||| |||||||||||||||||||||||    
T  18336459 ttatcaaaaaccgctataagcacatgtaaaaataacagttaccaaacaggtcttt 18336405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 31812205 - 31812163
Alignment:
Q  273 ataagctaactaattgaatttgtagtgtttggtaaaattaacg 315  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  31812205 ataagctagctgattgaatttgtagtgtttggtaaaattaacg 31812163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 1015118 - 1015046
Alignment:
Q  273 ataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||||||| ||| ||||||| ||||||| ||||||||| | || |||||||| | | |||||||||||||    
T  1015118 ataagctaactgattaaatttgttgtgtttgataaaattaatgtttgaagtagctcatagatatgaaatgaca 1015046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 6462237 - 6462279
Alignment:
Q  270 cagataagctaactaattgaatttgtagtgtttggtaaaatta 312  Q
    ||||||||||| || |||||||||||||||||| |||||||||    
T  6462237 cagataagctagctgattgaatttgtagtgtttagtaaaatta 6462279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 32815872 - 32815823
Alignment:
Q  266 atagcagataagctaactaattgaatttgtagtgtttggtaaaattaacg 315  Q
    ||||| |||||| |||||||||| |||| || ||||||||||||||||||    
T  32815872 atagccgataagttaactaattggatttataatgtttggtaaaattaacg 32815823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 41662481 - 41662530
Alignment:
Q  266 atagcagataagctaactaattgaatttgtagtgtttggtaaaattaacg 315  Q
    ||||| |||||| |||||||||| ||||||| |||||| |||||||||||    
T  41662481 atagccgataagttaactaattggatttgtaatgtttgataaaattaacg 41662530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 2111091 - 2111018
Alignment:
Q  272 gataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||| ||||| |||||||||| ||||||||||||||||| || || || ||||||| |||||||||||||||    
T  2111091 gataagataactgattgaatttgcagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgaca 2111018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 43408758 - 43408677
Alignment:
Q  264 ttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||| ||||||||| |  ||||||||||||||||||||||||||||   ||| || ||||||| |||||||||||||||    
T  43408758 ttatagcggataagctagccgattgaatttgtagtgtttggtaaaattagtaattgaactagcttataaatatgaaatgaca 43408677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 12525110 - 12525164
Alignment:
Q  354 tgtgcatttaattaatatttatttattttaattaagattgtaggagtaagattga 408  Q
    ||||||||||||||||||||| || ||||||||||||||||||| |||| |||||    
T  12525110 tgtgcatttaattaatatttactttttttaattaagattgtaggggtaaaattga 12525164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 21367080 - 21367133
Alignment:
Q  272 gataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagc 326  Q
    |||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||    
T  21367080 gataagctaactgattga-tttgtagtgtttggtaaaattagcgattgaagtagc 21367133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 263 - 345
Target Start/End: Original strand, 28947300 - 28947382
Alignment:
Q  263 cttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||||| ||||||||| || |||||||||| ||||||| ||||||||   | || || ||||||| |||||||||||||||    
T  28947300 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgaca 28947382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 35764788 - 35764728
Alignment:
Q  285 attgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||||||| ||||||||||||||||| || || || ||| ||| |||||||||||||||    
T  35764788 attgaatttgcagtgtttggtaaaattagcggttgaactagtttataaatatgaaatgaca 35764728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 681
Target Start/End: Original strand, 12524589 - 12524636
Alignment:
Q  634 ataacatataagttagttgattgaatttgtagtgtttggtcaaattag 681  Q
    |||||| |||| |||| ||||||||||||||||||||||| |||||||    
T  12524589 ataacagataatttagctgattgaatttgtagtgtttggtaaaattag 12524636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 680
Target Start/End: Complemental strand, 29861558 - 29861519
Alignment:
Q  641 ataagttagttgattgaatttgtagtgtttggtcaaatta 680  Q
    ||||| ||||||||||||||||||||||||||| ||||||    
T  29861558 ataagctagttgattgaatttgtagtgtttggtaaaatta 29861519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 12367656 - 12367618
Alignment:
Q  279 taactaattgaatttgtagtgtttggtaaaattaacgat 317  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  12367656 taacttattgaatttgtagtgtttgataaaattaacgat 12367618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 8407639 - 8407590
Alignment:
Q  296 agtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||||||||||||| || || || ||||||| |||||||||||||||    
T  8407639 agtgtttggtaaaattagcggttgaactagcttataaatatgaaatgaca 8407590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 345
Target Start/End: Original strand, 28175449 - 28175507
Alignment:
Q  287 tgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||||||||||||| || ||||| || || ||||||||||||||||||||||||||    
T  28175449 tgaatttgtagtgtttgatataattagcggttgaagtagcttacaaatatgaaatgaca 28175507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 2525376 - 2525296
Alignment:
Q  261 agcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaat 341  Q
    |||||||||| ||||||||| || |||||||||||| ||||||||||||||| |   | || ||||||| |||||||||||    
T  2525376 agcttatagcggataagctagctgattgaatttgtattgtttggtaaaattagcagctgaactagcttataaatatgaaat 2525296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 31740664 - 31740590
Alignment:
Q  266 atagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaat 341  Q
    |||||||||||| || || |||||||||| |||||||||||||||| |||||| || || |||| |||||||||||    
T  31740664 atagcagataagttagcttattgaatttgcagtgtttggtaaaatt-acgattgaattaacttataaatatgaaat 31740590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 44235299 - 44235370
Alignment:
Q  266 atagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatg 337  Q
    |||||||||||| || || ||| |||||||||||||||||||| |||||  || |||||||||| |||||||    
T  44235299 atagcagataagttagctgatttaatttgtagtgtttggtaaagttaaccgttgaagtagcttataaatatg 44235370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 402
Target Start/End: Complemental strand, 883930 - 883829
Alignment:
Q  300 tttggtaaaattaacgattaaagtagcttacaaatatgaaatgacacnnnnnnntgtgcatttaattaatatttatttattttaattaagattgtaggag 399  Q
    |||| ||||||||||| || |||||||||| |||||||||||||||        |||||||||||||| ||||||||| ||| ||||| ||||| ||| |    
T  883930 tttgataaaattaacggttgaagtagcttataaatatgaaatgaca-taaaaaatgtgcatttaattagtatttatttttttcaattaggattgcagggg 883832  T
Q  400 taa 402  Q
    |||    
T  883831 taa 883829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 402
Target Start/End: Complemental strand, 1243259 - 1243158
Alignment:
Q  300 tttggtaaaattaacgattaaagtagcttacaaatatgaaatgacacnnnnnnntgtgcatttaattaatatttatttattttaattaagattgtaggag 399  Q
    |||| ||||||||||| || |||||||||| |||||||||||||||        |||||||||||||| ||||||||| ||| ||||| ||||| ||| |    
T  1243259 tttgataaaattaacggttgaagtagcttataaatatgaaatgaca-taaaaaatgtgcatttaattagtatttatttttttcaattaggattgcagggg 1243161  T
Q  400 taa 402  Q
    |||    
T  1243160 taa 1243158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 3837143 - 3837088
Alignment:
Q  289 aatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgac 344  Q
    |||||||||||||||||||||||| |  || |||||||||| ||||||| ||||||    
T  3837143 aatttgtagtgtttggtaaaattagccgttgaagtagcttataaatatgtaatgac 3837088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 13438306 - 13438385
Alignment:
Q  266 atagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||| ||| ||||| || ||| ||||||||||||||||| |||||| || ||||| || |||| |||||| ||||||||    
T  13438306 atagctgatgagctagcttattaaatttgtagtgtttggttaaattagcggttaaactaacttataaatataaaatgaca 13438385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 627 - 673
Target Start/End: Original strand, 44235292 - 44235338
Alignment:
Q  627 atagttgataacatataagttagttgattgaatttgtagtgtttggt 673  Q
    |||||||||| || ||||||||| ||||| |||||||||||||||||    
T  44235292 atagttgatagcagataagttagctgatttaatttgtagtgtttggt 44235338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 34837135 - 34837176
Alignment:
Q  356 tgcatttaattaatatttatttattttaattaagattgtagg 397  Q
    |||||||||||||||||||||| ||| ||||| |||||||||    
T  34837135 tgcatttaattaatatttatttttttcaattaggattgtagg 34837176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 37334713 - 37334635
Alignment:
Q  267 tagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||||||||||  | ||||||| || |||||||| |||||||| ||| ||||||||| || |||||||||||||||    
T  37334713 tagcagataagctagttgattgaatatgcagtgtttgataaaattagcgactaaagtagcatataaatatgaaatgaca 37334635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 35682716 - 35682648
Alignment:
Q  273 ataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaat 341  Q
    ||||||||| | ||||||||||||||||||||||||| ||  |||| || ||||||| |||||||||||    
T  35682716 ataagctaattgattgaatttgtagtgtttggtaaaactagagatttaattagcttataaatatgaaat 35682648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 9780485 - 9780559
Alignment:
Q  272 gataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgacac 346  Q
    |||||| ||||| |||| ||||||| |||||||||||||||||| || || ||| ||| ||||| ||||||||||    
T  9780485 gataagttaactgattggatttgtaatgtttggtaaaattaacggttgaactagtttataaatacgaaatgacac 9780559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 31534411 - 31534521
Alignment:
Q  289 aatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgacacnnnnnnntgtgcatttaattaatatttatttattttaattaa 388  Q
    ||||| |||| ||||||||||| | |||||||| ||  ||| ||| |||||||||||         ||||||||||||||||||||||| ||||||||||    
T  31534411 aatttatagtatttggtaaaatcatcgattaaaataatttataaaaatgaaatgacataacaaaaagtgcatttaattaatatttattt-ttttaattaa 31534509  T
Q  389 gattgtaggagt 400  Q
    ||||||| ||||    
T  31534510 gattgtaagagt 31534521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 42603825 - 42603903
Alignment:
Q  261 agcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaa 339  Q
    ||||||||||| ||||| ||| | ||||||||||||||||||  |||||||| || || |||||| ||| |||||||||    
T  42603825 agcttatagcatataagttaattgattgaatttgtagtgtttaataaaattagcggttgaagtagattaaaaatatgaa 42603903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 35696704 - 35696647
Alignment:
Q  255 tggatgagcttatagcagataagctaactaattgaatttgtagtgtttggtaaaatta 312  Q
    |||| ||||||||||  ||||||||| |  ||||||||||||||||||||||||||||    
T  35696704 tggacgagcttatagtggataagctagcagattgaatttgtagtgtttggtaaaatta 35696647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 641 - 681
Target Start/End: Original strand, 9198039 - 9198079
Alignment:
Q  641 ataagttagttgattgaatttgtagtgtttggtcaaattag 681  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  9198039 ataagttagttgattgaatctgtagtgtttggtaaaattag 9198079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 18084864 - 18084942
Alignment:
Q  266 atagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||| |||||| || || |||||||||| |||||||||||||||| |||||| || || |||| |||||| ||||||||    
T  18084864 atagcggataagttagctgattgaatttgcagtgtttggtaaaatt-acgattgaattaacttataaatataaaatgaca 18084942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 647 - 681
Target Start/End: Complemental strand, 32582663 - 32582629
Alignment:
Q  647 tagttgattgaatttgtagtgtttggtcaaattag 681  Q
    ||||||||||||||||||||||||||| |||||||    
T  32582663 tagttgattgaatttgtagtgtttggtaaaattag 32582629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 32582682 - 32582598
Alignment:
Q  260 gagcttatagcagataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||| ||||| ||||| |||  | |||||||||||||||||||||||||||| |   | |||||||||| || ||||||||||||    
T  32582682 gagctgatagctgataacctagttgattgaatttgtagtgtttggtaaaattagc-cgtgaagtagcttataagtatgaaatgaca 32582598  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 36618166 - 36618121
Alignment:
Q  267 tagcagataagctaactaattgaatttgtagtgtttggtaaaatta 312  Q
    |||| ||||||||| | |||||||||||||||||| ||||||||||    
T  36618166 tagctgataagctagccaattgaatttgtagtgttcggtaaaatta 36618121  T

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Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 1288508 - 1288441
Alignment:
Q  278 ctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    |||||| ||||| ||||||||||||| ||||||||||| || || || |||| |||||||||||||||    
T  1288508 ctaacttattgattttgtagtgtttgataaaattaacggttgaaataacttataaatatgaaatgaca 1288441  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 29052773 - 29052700
Alignment:
Q  272 gataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtagcttacaaatatgaaatgaca 345  Q
    ||||||||| || |||||||||| ||||||||||||||| | || || |  ||||||| |||||||||||||||    
T  29052773 gataagctagctgattgaatttgcagtgtttggtaaaataagcggttcacctagcttataaatatgaaatgaca 29052700  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 9749789 - 9749840
Alignment:
Q  261 agcttatagcagataagctaactaattgaatttgtagtgtttggtaaaatta 312  Q
    ||||||||||  |||||||| || ||| ||||||||||||||||||||||||    
T  9749789 agcttatagcgcataagctagctgatttaatttgtagtgtttggtaaaatta 9749840  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 14755711 - 14755764
Alignment:
Q  272 gataagctaactaattgaatttgtagtgtttggtaaaattaacgattaaagtag 325  Q
    |||||||||||| ||| |||||||| |||||| ||||||| |||||| ||||||    
T  14755711 gataagctaactgattcaatttgtattgtttgataaaattgacgatttaagtag 14755764  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 624 - 681
Target Start/End: Complemental strand, 8168 - 8111
Alignment:
Q  624 tttatagttgataacatataagttagttgattgaatttgtagtgtttggtcaaattag 681  Q
    |||| |||||||||   |||||||| |||||||||||||||||||||| | |||||||    
T  8168 tttacagttgataatggataagttaattgattgaatttgtagtgtttgataaaattag 8111  T

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