View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12394_high_2 (Length: 509)
Name: NF12394_high_2
Description: NF12394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12394_high_2 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 476
Target Start/End: Complemental strand, 11427573 - 11427105
Alignment:
| Q |
16 |
tgtgaatataacgattctaagtcgattgtcttacaagtcaatagtgttcaaattttttctctttggtatcgcttccttgccaattcgatc--------ca |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
11427573 |
tgtgaatataacgattctaagtcgatcgtcttacaagtcaatagtgttcaaagattttctctttggtatcgcttccttgctaattcgatcgatggatcca |
11427474 |
T |
|
| Q |
108 |
ccattgtttaattacaggtatgtataccattccactaagcgttgcttctcctatttttcaaataattttgtaggaannnnnnnnnnnnnnnnnaatcttc |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11427473 |
ccattgtttaattacaggtatgtatacgattccactaagcgttgcttctcctatttttcaaataattttgtaggaattttttaatttttttttaatcttc |
11427374 |
T |
|
| Q |
208 |
tgcttttgttggagctgcagtgaaacctttctcatgctttggttgtggatgatcttttctctgtcctttctttcctcgttggcgactgatgcttccaatg |
307 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || |
|
|
| T |
11427373 |
tgcttttgttggagctgtagtgaaacctttctcatgctttggttgtggatgatcttttctctgtcctttctttcctcgttggcgaccgatgcttcgagtg |
11427274 |
T |
|
| Q |
308 |
taatttctttgattaacgtgttttctttgacaattaataatataaggtatgattcaatatttatctttgtgtgatgaccactaatttaatttgaagctga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11427273 |
taatttctttgattaacgtgttttctttgacaattaataatataaggtatgattcaatatttatctttgtgtgatgaccactaatttaatttgaaggtga |
11427174 |
T |
|
| Q |
408 |
ttttagggagcatacatcattttcatagtatcaagatgcaaaactaattacattttgcaatcaggtaat |
476 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11427173 |
ttttagggagcatacatcattttcatggtatcaagatgcaaaactaattatattttgcaatcaggtaat |
11427105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 208 - 334
Target Start/End: Complemental strand, 11431110 - 11430984
Alignment:
| Q |
208 |
tgcttttgttggagctgcagtgaaacctttctcatgctttggttgtggatgatcttttctctgtcctttctttcctcgttggcgactgatgcttccaatg |
307 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| | |||||||| |||||||| | || |
|
|
| T |
11431110 |
tgcttttgttggaactgcagtaaaacctttctcatgcttttgttgtggatgatcttttctctgtcctttgtttcgtggttggcgatcgatgcttcgagtg |
11431011 |
T |
|
| Q |
308 |
taatttctttgattaacgtgttttctt |
334 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
11431010 |
taatttatttgattaacgtgttttctt |
11430984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 11431216 - 11431151
Alignment:
| Q |
102 |
gatccaccattgtttaattacaggtatgtataccattccactaagcgttgcttctcctatttttca |
167 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
11431216 |
gatccaccattctttaactacaggtatgcatatgattccactatgcgctgcttctcctatttttca |
11431151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 509
Target Start/End: Original strand, 997806 - 997840
Alignment:
| Q |
475 |
atctatctaatctaatctaacttattcctaatcct |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
997806 |
atctatctaatctaatctaacttattcctaatcct |
997840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 5878828 - 5878780
Alignment:
| Q |
335 |
tgacaattaataatataaggtatgattcaatatttatctttgtgtgatga |
384 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5878828 |
tgacaattgaaaatataaggtatgattcaatatttat-tttgtgtgatga |
5878780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 5874939 - 5874891
Alignment:
| Q |
335 |
tgacaattaataatataaggtatgattcaatatttatctttgtgtgatga |
384 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5874939 |
tgacaattgacaatataaggtatgattcaatatttat-gttgtgtgatga |
5874891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 509
Target Start/End: Original strand, 31444760 - 31444791
Alignment:
| Q |
478 |
tatctaatctaatctaacttattcctaatcct |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31444760 |
tatctaatctaatctaacttattcctaatcct |
31444791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 509
Target Start/End: Complemental strand, 32651334 - 32651304
Alignment:
| Q |
479 |
atctaatctaatctaacttattcctaatcct |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32651334 |
atctaatctaatctaacttattcctaatcct |
32651304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 20431292 - 20431259
Alignment:
| Q |
335 |
tgacaattaataatataaggtatgattcaatatt |
368 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
20431292 |
tgacaattaacaatataaggtatgattcaatatt |
20431259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University