View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12394_low_4 (Length: 385)
Name: NF12394_low_4
Description: NF12394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12394_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 52590409 - 52590042
Alignment:
| Q |
1 |
tggtggccacaacaatgtctctcctgcattggagttgagaaactgtgaaagcgatggattagccacatctgatgacgatgccattcataaaagacnnnnn |
100 |
Q |
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| T |
52590409 |
tggtggccacaacaatgtctctcttgcattggagttgagaaactgtgaaagcgatggattagccacatctgatgacgatgccattcataaaagacataat |
52590310 |
T |
|
| Q |
101 |
nnnnnnnnnnnncagacattggtttcttcttcacagagtactgatttactagactatcatttcacagattcaggaaagcaacaacacatgtttggcaata |
200 |
Q |
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| T |
52590309 |
aataataataatcagacattggtttcttcttcacagagtactgatttactagactatcatttcacagattcaggaaagcaacaacacatgtttggcaata |
52590210 |
T |
|
| Q |
201 |
ctcatctgttgcatgaatttgtcgtatgaaaatctaccaaagatannnnnnnnnnnnnnactaaaggtatcttatctctgaaaggtgtacttcctcaaac |
300 |
Q |
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| T |
52590209 |
ctcatctgttgcatgaatttgtcgtatgaaaatctaccaaagata-tttttcattttttactaaaggtatcttatctctgaaaggtgtacttcctcaaac |
52590111 |
T |
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| Q |
301 |
catatgctgttgttttttaattccattcattcattcgcgttgccctcattgttcataaaagtgatgtaat |
370 |
Q |
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| T |
52590110 |
catatgctgttgttttttaatt-cattcattcattcgcgttgccctcattgttcataaaagtgatgtaat |
52590042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 7301149 - 7301066
Alignment:
| Q |
139 |
tactgatttactagactatcatttcacagattcaggaaagcaacaacacatgtttggcaatactcatctgttgcatgaatttgt |
222 |
Q |
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| T |
7301149 |
tactgatttgttagactatcacttcacagacactggaaagcaacaacacaagtttgccaaccctcatttgttacatgagtttgt |
7301066 |
T |
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