View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12394_low_5 (Length: 272)
Name: NF12394_low_5
Description: NF12394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12394_low_5 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 22020090 - 22019847
Alignment:
| Q |
10 |
ctacaaacttcaactgagcccatatttggtattaaaactcaatataaaatcatcactgcttgctgcattttacacaattatttgatgagtgaagacccca |
109 |
Q |
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||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22020090 |
ctacaaacttcaactgaacccgcatttggtattaaaacccaaaataaaatcatcactgcttgctgcattttacacaactatttgatgagtgaagacccca |
22019991 |
T |
|
| Q |
110 |
accaaactctaatagatgaggtgcagcatgatcttgcaaatgaaattgattctcaagagggtcgtcaagatcaaagagaagacaatggtgatgcagttag |
209 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22019990 |
gccaaactgtaatagatgaggtgcaacatgatcttgcaaatgaaagtgattctcaagagggtcgtcaagatcaaagagaagacaatgttgatgcagttag |
22019891 |
T |
|
| Q |
210 |
tggagagtcaattagagatggggttgctggttctatgtggatag |
253 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
22019890 |
tggagagccaattagagatgacgttgctggttctatgtggatag |
22019847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 20715772 - 20715520
Alignment:
| Q |
1 |
tttccgattctacaaacttcaactgagcccatatttggtattaaaactcaatataaaatcatcactgcttgctgcattttacacaattatttgatgagtg |
100 |
Q |
| |
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||||| ||||| |||||||||||||| |||| |||||| |||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||| || |
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| T |
20715772 |
tttccaattctgcaaacttcaactgaacccacatttggaattaaaactcaaaataaaatcattgttgcttgttgcatcttacacaattatttgatgactg |
20715673 |
T |
|
| Q |
101 |
aagaccccaaccaaactctaatagatgaggtgcagcatgatcttgcaaatgaaattgattctcaagagggtcgtcaagatcaaagagaagacaatggtga |
200 |
Q |
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||||||| ||||| | ||||||||| ||||||| || || || ||||||||| | || |||||||| | ||||| |||||||||| |||||| ||| |
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| T |
20715672 |
aagaccctaaccagaatctaatagacgaggtgcgtcacgagctcacaaatgaaagcggtttgcaagagggacatcaagctcaaagagaaaacaatgatga |
20715573 |
T |
|
| Q |
201 |
tgcagttagtggagagtcaattagagatggggttgctggttctatgtggatag |
253 |
Q |
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| ||| ||| |||||| | |||||| || ||| ||||||| |||||||||| |
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| T |
20715572 |
tacagctagaggagagctagttagagctgatgttactggttcaatgtggatag |
20715520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 19610 - 19358
Alignment:
| Q |
1 |
tttccgattctacaaacttcaactgagcccatatttggtattaaaactcaatataaaatcatcactgcttgctgcattttacacaattatttgatgagtg |
100 |
Q |
| |
|
||||| ||||| |||||||||||||| |||| |||||| |||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||| || |
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| T |
19610 |
tttccaattctgcaaacttcaactgaacccacatttggaattaaaactcaaaataaaatcattgttgcttgttgcatcttacacaattatttgatgactg |
19511 |
T |
|
| Q |
101 |
aagaccccaaccaaactctaatagatgaggtgcagcatgatcttgcaaatgaaattgattctcaagagggtcgtcaagatcaaagagaagacaatggtga |
200 |
Q |
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||||||| ||||| | ||||||||| ||||||| || || || ||||||||| | || |||||||| | ||||| |||||||||| |||||| ||| |
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| T |
19510 |
aagaccctaaccagaatctaatagacgaggtgcgtcacgagctcacaaatgaaagcggtttgcaagagggacatcaagctcaaagagaaaacaatgatga |
19411 |
T |
|
| Q |
201 |
tgcagttagtggagagtcaattagagatggggttgctggttctatgtggatag |
253 |
Q |
| |
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| ||| ||| |||||| | |||||| || ||| ||||||| |||||||||| |
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| T |
19410 |
tacagctagaggagagctagttagagctgatgttactggttcaatgtggatag |
19358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 22529473 - 22529221
Alignment:
| Q |
1 |
tttccgattctacaaacttcaactgagcccatatttggtattaaaactcaatataaaatcatcactgcttgctgcattttacacaattatttgatgagtg |
100 |
Q |
| |
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||||| ||||| |||||||||||||| |||| |||||| |||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||| || |
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| T |
22529473 |
tttccaattctgcaaacttcaactgaacccacatttggaattaaaactcaaaataaaatcattgttgcttgttgcatcttacacaattatttgatgactg |
22529374 |
T |
|
| Q |
101 |
aagaccccaaccaaactctaatagatgaggtgcagcatgatcttgcaaatgaaattgattctcaagagggtcgtcaagatcaaagagaagacaatggtga |
200 |
Q |
| |
|
||||||| ||||| | ||||||||| ||||||| || || || ||||||||| | || |||||||| | ||||| |||||||||| |||||| ||| |
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| T |
22529373 |
aagaccctaaccagaatctaatagacgaggtgcgtcacgagctcacaaatgaaagcggtttgcaagagggacatcaagctcaaagagaaaacaatgatga |
22529274 |
T |
|
| Q |
201 |
tgcagttagtggagagtcaattagagatggggttgctggttctatgtggatag |
253 |
Q |
| |
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| ||| ||| |||||| | |||||| || ||| ||||||| |||||||||| |
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| T |
22529273 |
tacagctagaggagagctagttagagctgatgttactggttcaatgtggatag |
22529221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 25992082 - 25991830
Alignment:
| Q |
1 |
tttccgattctacaaacttcaactgagcccatatttggtattaaaactcaatataaaatcatcactgcttgctgcattttacacaattatttgatgagtg |
100 |
Q |
| |
|
||||| ||||| ||||||||||||| |||| |||||| |||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||| || |
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| T |
25992082 |
tttccaattctgtaaacttcaactgaacccacatttggaattaaaactcaaaataaaatcattgttgcttgttgcatcttacacaattatttgatgactg |
25991983 |
T |
|
| Q |
101 |
aagaccccaaccaaactctaatagatgaggtgcagcatgatcttgcaaatgaaattgattctcaagagggtcgtcaagatcaaagagaagacaatggtga |
200 |
Q |
| |
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||||||| ||||| | ||||||||| ||||||| || || || ||||||||| | || |||||||| | ||||| |||||||||| |||||| ||| |
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| T |
25991982 |
aagaccctaaccagaatctaatagacgaggtgcgtcacgagctcacaaatgaaagcggtttgcaagagggacatcaagctcaaagagaaaacaatgatga |
25991883 |
T |
|
| Q |
201 |
tgcagttagtggagagtcaattagagatggggttgctggttctatgtggatag |
253 |
Q |
| |
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| ||| ||| |||||| | |||||| || ||| ||||||| |||||||||| |
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|
| T |
25991882 |
tacagctagaggagagctagttagagctgatgttactggttcaatgtggatag |
25991830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 20985183 - 20985435
Alignment:
| Q |
1 |
tttccgattctacaaacttcaactgagcccatatttggtattaaaactcaatataaaatcatcactgcttgctgcattttacacaattatttgatgagtg |
100 |
Q |
| |
|
||||| ||||| |||||||||||||| |||| |||||| |||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||| || |
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|
| T |
20985183 |
tttccaattctgcaaacttcaactgaacccacatttggaattaaaactcaaaataaaatcattgttgcttgttgcatcttacacaattatttgatgactg |
20985282 |
T |
|
| Q |
101 |
aagaccccaaccaaactctaatagatgaggtgcagcatgatcttgcaaatgaaattgattctcaagagggtcgtcaagatcaaagagaagacaatggtga |
200 |
Q |
| |
|
||||||| ||||| | ||||||||| ||||||| || || || ||||||||| | || |||||||| | ||||| |||||||||| |||||| ||| |
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|
| T |
20985283 |
aagaccctaaccagaatctaatagacgaggtgcgtcacgagctcacaaatgaaagcggtttgcaagagggacatcaagctcaaagagaaaacaatgatga |
20985382 |
T |
|
| Q |
201 |
tgcagttagtggagagtcaattagagatggggttgctggttctatgtggatag |
253 |
Q |
| |
|
| ||| ||| |||||| | |||||| || ||| ||||||| |||||||||| |
|
|
| T |
20985383 |
tacagctagaggagagctagttagagctgatgttactggttcaatgtggatag |
20985435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 33093093 - 33093345
Alignment:
| Q |
1 |
tttccgattctacaaacttcaactgagcccatatttggtattaaaactcaatataaaatcatcactgcttgctgcattttacacaattatttgatgagtg |
100 |
Q |
| |
|
||||| ||||| |||||||||||||| |||| ||||| |||||||||||| |||||||||| || ||| ||||| ||||||||||||||||||| || |
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|
| T |
33093093 |
tttccaattctgcaaacttcaactgaacccacatttgaaattaaaactcaaaataaaatcattgttgattgttgcatcttacacaattatttgatgactg |
33093192 |
T |
|
| Q |
101 |
aagaccccaaccaaactctaatagatgaggtgcagcatgatcttgcaaatgaaattgattctcaagagggtcgtcaagatcaaagagaagacaatggtga |
200 |
Q |
| |
|
||||||| ||||| | ||||||||| ||||||| || || || ||||||||| | || |||||||| | ||||| |||||||||| |||||| ||| |
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|
| T |
33093193 |
aagaccctaaccagaatctaatagacgaggtgcgtcacgagctcacaaatgaaagcggtttgcaagagggacatcaagctcaaagagaaaacaatgatga |
33093292 |
T |
|
| Q |
201 |
tgcagttagtggagagtcaattagagatggggttgctggttctatgtggatag |
253 |
Q |
| |
|
| | | ||| |||||| | |||||| || ||| ||||||| |||||||||| |
|
|
| T |
33093293 |
taccgctagaggagagctagttagagctgatgttactggttcaatgtggatag |
33093345 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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