View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12394_low_7 (Length: 250)
Name: NF12394_low_7
Description: NF12394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12394_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 32959561 - 32959477
Alignment:
| Q |
148 |
caatttaatacttgattggaatgtaataataatgtaaagtctccatctatatatgttgagtcggtcagaatcagaatcaaaatca |
232 |
Q |
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| T |
32959561 |
caatttaatacttgattggaatgtaataataatgtaaagtctccatctatatatgttgagtcggtcagaatcagaatcagaatca |
32959477 |
T |
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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 32959675 - 32959587
Alignment:
| Q |
19 |
ctgaatgcctgattcaaattggtcagtccattcaggaggaagctgcaattaataccaaaagaggatgaaatcaatcatcatcaaaataa |
107 |
Q |
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| T |
32959675 |
ctgaatgcctgattcaaactggtcagtccattcaggaggaagctgcaattaataccaaaagaggatgaaatcaatcatcatcataataa |
32959587 |
T |
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