View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12394_low_8 (Length: 250)
Name: NF12394_low_8
Description: NF12394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12394_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 28932575 - 28932340
Alignment:
| Q |
15 |
aattttctctctaacattgtgagaaacctgcaaaaaggataactactaatcaaattccaaacaatgtgtcaatttattcgtaatagattatgagatacca |
114 |
Q |
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| T |
28932575 |
aattttctctctaacattgtgagaaacctgcaaaaaggataactactaatcaaattccaaacaatgtgtcaatttattcacaatagattacgagatacca |
28932476 |
T |
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| Q |
115 |
agttgcaaaccaaaagctcaataacaaggcaatatataagaatcaaatacttcagtcacacaaacaaacaaagaataacatatataaatagcaaagggta |
214 |
Q |
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| T |
28932475 |
agttgcaaaccaaaagctcaataacaaggcaatatataagaatcaaatacttcagtcacacaaacaaacaaagaataacatatataaatagcaaagggta |
28932376 |
T |
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| Q |
215 |
cagatgtgttattagtatcttaaaatatatacaagc |
250 |
Q |
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| T |
28932375 |
tagatgtgttattagtatcttaaaatatatacaagc |
28932340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 10186959 - 10186791
Alignment:
| Q |
15 |
aattttctctctaacattgtgagaaacctgcaaaaaggataactactaatcaaattccaaacaatgtgtcaatttattcgtaatagattatgagatacca |
114 |
Q |
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| T |
10186959 |
aattttctctttaacattgtgagaaacctgcaaaaggtataattactgatcaaattccaagaaacgtgacatgttattcacaatagattaaaggatatcg |
10186860 |
T |
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| Q |
115 |
agttgcaaaccaaaagctcaataacaaggcaatatataagaatcaaatacttcagtcacacaaacaaac |
183 |
Q |
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| T |
10186859 |
agttcctaaccaaaaattcaataacaaggcaatatagaagaatcaaaagctttggccacacaaacaaac |
10186791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 35121486 - 35121677
Alignment:
| Q |
15 |
aattttctctctaacattgtgagaaacctgcaaaaaggataactactaatcaaattccaaacaatgtgtcaatttattcgtaatagattatgagatacca |
114 |
Q |
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|||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| || ||||||| |||||| ||||||||| | ||||||| |
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| T |
35121486 |
aattttctctttaacattgtgagaaacctgcaaaagatataattactaatcaaattccaagaaacgtgtcaagttattcacaatagattacgggatacca |
35121585 |
T |
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| Q |
115 |
agttgcaaaccaaaagctcaataacaaggcaatatataagaatcaaatacttcagtcacacaaacaaacaaagaataacatatataaatagc |
206 |
Q |
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| T |
35121586 |
agttcccaaccaaaagttcaataacaaggcaacatagaagaatcaaaagctttagctactcaaacaaacaaagaagcacacaaataaatagc |
35121677 |
T |
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