View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12395_high_1 (Length: 655)

Name: NF12395_high_1
Description: NF12395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12395_high_1
NF12395_high_1
[»] scaffold0568 (2 HSPs)
scaffold0568 (18-629)||(1770-2381)
scaffold0568 (18-629)||(8372-8983)
[»] chr4 (5 HSPs)
chr4 (15-355)||(17059846-17060186)
chr4 (408-625)||(17060184-17060401)
chr4 (20-165)||(43262189-43262334)
chr4 (41-157)||(36229097-36229211)
chr4 (465-509)||(18198940-18198984)
[»] chr1 (3 HSPs)
chr1 (20-178)||(48223115-48223273)
chr1 (20-162)||(48223411-48223555)
chr1 (472-519)||(20264808-20264855)
[»] chr2 (3 HSPs)
chr2 (516-609)||(29158097-29158190)
chr2 (329-436)||(21990432-21990540)
chr2 (472-519)||(28658640-28658687)
[»] chr5 (1 HSPs)
chr5 (237-302)||(5523931-5523996)
[»] scaffold0576 (1 HSPs)
scaffold0576 (465-519)||(4537-4591)
[»] chr8 (1 HSPs)
chr8 (465-519)||(3734086-3734140)
[»] chr7 (1 HSPs)
chr7 (465-519)||(2751955-2752009)
[»] chr6 (1 HSPs)
chr6 (465-519)||(15359553-15359607)
[»] scaffold0002 (1 HSPs)
scaffold0002 (465-509)||(288813-288857)


Alignment Details
Target: scaffold0568 (Bit Score: 576; Significance: 0; HSPs: 2)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 18 - 629
Target Start/End: Original strand, 1770 - 2381
Alignment:
18 tattttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgattatgaaaatgatgtataaaacttgtttaa 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
1770 tattttttagaaaatgaattttcatggatttagtactaattttggaatctacttgtcatttggagaatgaatatgaaaataatgtataaaacttgtttaa 1869  T
118 tttctaagtttgtgatgcatatgatttggatttggttacaagaatttaaatttttgaagaagcttactagactttattattagagaaggttaacatttga 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
1870 tttctgagtttgtgatgcatatgatttggatttggttacaagaatttaaatttttgaagaagcttactagactttattattaaagaaagttaacatttga 1969  T
218 gcagatttttaacttgagcatgttctttacttttcaatatggtttaatctctagtaaggtttgagcatcaagtgtagaaagagttcattgcttcgaaaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1970 gcagatttttaacttgagcatgttctttacttttcaatatggtttaatctctagtaaggtttgagcatcaagtgtagaaagagttcattgcttcgaaaaa 2069  T
318 atatgggctggttactattgcattttgttaacttttttctcctaatttatttattgtttatgggcttgatatataggggatgaagacgtctttgctgatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2070 atatgggctggttactattgcattttgttaacttttttctcctaatttatttattgtttatgggcttgatatataggggatgaagacgtctttgctgatt 2169  T
418 gtggttggaattgttgagagaattcagagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttaataactta 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
2170 gtggttggaattgttgagagaattcagagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttagtaactta 2269  T
518 ttgtttcttgaagagtatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgcaaaatttt 617  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
2270 ttgtttcttgaagagcatggtaatgcactggaagcctacctgttgccattatttgacccaaatataactcccaaaaatgtggttataattgcaaaatttt 2369  T
618 gacaggttctgg 629  Q
    ||||||||||||    
2370 gacaggttctgg 2381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568; HSP #2
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 18 - 629
Target Start/End: Original strand, 8372 - 8983
Alignment:
18 tattttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgattatgaaaatgatgtataaaacttgtttaa 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
8372 tattttttagaaaatgaattttcatggatttagtactaattttggaatctacttgtcatttggagaatgaatatgaaaataatgtataaaacttgtttaa 8471  T
118 tttctaagtttgtgatgcatatgatttggatttggttacaagaatttaaatttttgaagaagcttactagactttattattagagaaggttaacatttga 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
8472 tttctgagtttgtgatgcatatgatttggatttggttacaagaatttaaatttttgaagaagcttactagactttattattaaagaaagttaacatttga 8571  T
218 gcagatttttaacttgagcatgttctttacttttcaatatggtttaatctctagtaaggtttgagcatcaagtgtagaaagagttcattgcttcgaaaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8572 gcagatttttaacttgagcatgttctttacttttcaatatggtttaatctctagtaaggtttgagcatcaagtgtagaaagagttcattgcttcgaaaaa 8671  T
318 atatgggctggttactattgcattttgttaacttttttctcctaatttatttattgtttatgggcttgatatataggggatgaagacgtctttgctgatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8672 atatgggctggttactattgcattttgttaacttttttctcctaatttatttattgtttatgggcttgatatataggggatgaagacgtctttgctgatt 8771  T
418 gtggttggaattgttgagagaattcagagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttaataactta 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
8772 gtggttggaattgttgagagaattcagagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttagtaactta 8871  T
518 ttgtttcttgaagagtatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgcaaaatttt 617  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
8872 ttgtttcttgaagagcatggtaatgcactggaagcctacctgttgccattatttgacccaaatataactcccaaaaatgtggttataattgcaaaatttt 8971  T
618 gacaggttctgg 629  Q
    ||||||||||||    
8972 gacaggttctgg 8983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 355
Target Start/End: Original strand, 17059846 - 17060186
Alignment:
15 agatattttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgattatgaaaatgatgtataaaacttgtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
17059846 agatattttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtt 17059945  T
115 taatttctaagtttgtgatgcatatgatttggatttggttacaagaatttaaatttttgaagaagcttactagactttattattagagaaggttaacatt 214  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17059946 taatttctgagtttgtgatgcatatgatttggatttggttacaagaatttaaatttttgaagaagcttactagactttattattagagaaggttaacatt 17060045  T
215 tgagcagatttttaacttgagcatgttctttacttttcaatatggtttaatctctagtaaggtttgagcatcaagtgtagaaagagttcattgcttcgaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17060046 tgagcagatttttaacttgagcatgttctttacttttcaatatggtttaatctctagtaaggtttgagcatcaagtgtagaaagagttcattgcttcgaa 17060145  T
315 aaaatatgggctggttactattgcattttgttaactttttt 355  Q
    |||||||||||||||||||||||||||||||||||||||||    
17060146 aaaatatgggctggttactattgcattttgttaactttttt 17060186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 408 - 625
Target Start/End: Original strand, 17060184 - 17060401
Alignment:
408 tttgctgattgtggttggaattgttgagagaattcagagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttct 507  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17060184 tttgctgattgtggttggaattgttgagagaattcaaagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttct 17060283  T
508 taataacttattgtttcttgaagagtatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataatt 607  Q
    || |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17060284 tagtaacttattgtttcttgaagagcatggcaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataatt 17060383  T
608 gcaaaattttgacaggtt 625  Q
    ||||||||||||| ||||    
17060384 gcaaaattttgaccggtt 17060401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 43262334 - 43262189
Alignment:
20 ttttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgattatgaaaatgatgtataaaacttgtttaatt 119  Q
    ||||| |||||||||||||| |||||||||| |||||||||||||||||||| |||| |||||||||  ||||||||||||| | || ||||||||| ||    
43262334 tttttgagaaaatgaattttcatggatttagcactaattttggaatctacttctcatgtggagaatggatatgaaaatgatgcacaagacttgtttagtt 43262235  T
120 tctaagtttgtgatgc--atatgatttggatttggttacaagaattta 165  Q
      | ||||||||||||  ||||| ||||||||||||||||||| ||||    
43262234 --tgagtttgtgatgcatatatggtttggatttggttacaagacttta 43262189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 36229097 - 36229211
Alignment:
41 atggatttagtactaattttggaatctacttgtcatttggagaatgattatgaaaatgatgtataaaacttgtttaatttctaagtttgtgatgcatatg 140  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||| ||| | || ||||||||||||| | ||  | |||||||||||    
36229097 atggatttagtactaattttggaatctacttctcacgtggagaatgaatatgaaaataatgcacaagacttgtttaatttttgag--tctgatgcatatg 36229194  T
141 atttggatttggttaca 157  Q
     ||||||||| ||||||    
36229195 gtttggatttcgttaca 36229211  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 509
Target Start/End: Original strand, 18198940 - 18198984
Alignment:
465 tttaagtatttaagtgtttacactgacattactttgtacttctta 509  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||    
18198940 tttaaggatttaagcgtttacactgacattattttgtacttctta 18198984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 48223115 - 48223273
Alignment:
20 ttttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgattatgaaaatgatgtataaaacttgtttaatt 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
48223115 ttttttagaaaatgaattttcatggatttagtactaattttggaatctacttgtcatctggagaatgaatatgaaaatgatgtataaaacttgtttaatt 48223214  T
120 tctaagtttgtgatgcatatgatttggatttggttacaagaatttaaatttttgaagaa 178  Q
    ||| |||||||| |||||||||||||||||||||||||||| ||||| |||||||||||    
48223215 tctgagtttgtgctgcatatgatttggatttggttacaagactttaactttttgaagaa 48223273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 48223411 - 48223555
Alignment:
20 ttttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgattatgaaaatgatgtataaaacttgtttaatt 119  Q
    ||||| |||||||||||||| || |||||||||||||||||| ||||||||  |||| |||||||||  ||||||||||||||| || | ||||||||||    
48223411 tttttgagaaaatgaattttcatagatttagtactaattttgtaatctactcctcatgtggagaatgtatatgaaaatgatgtagaagatttgtttaatt 48223510  T
120 tctaagtttgtgatgc--atatgatttggatttggttacaagaat 162  Q
      | ||| ||||||||  ||||| ||||||||||||||| |||||    
48223511 gtttagtctgtgatgcatatatggtttggatttggttaccagaat 48223555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 519
Target Start/End: Original strand, 20264808 - 20264855
Alignment:
472 atttaagtgtttacactgacattactttgtacttcttaataacttatt 519  Q
    ||||||||| |||||||||||||| ||||||||||||| || ||||||    
20264808 atttaagtggttacactgacattattttgtacttcttagtagcttatt 20264855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 8e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 516 - 609
Target Start/End: Original strand, 29158097 - 29158190
Alignment:
516 tattgtttcttgaagagtatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgc 609  Q
    ||||||||||| ||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||    
29158097 tattgtttcttcaagagcaaggtaatgcattggaagcctacctgttgccaatatttgacccaaatatatctcccagaaatgtggctataattgc 29158190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 329 - 436
Target Start/End: Complemental strand, 21990540 - 21990432
Alignment:
329 ttactattgcattttgttaacttttttctcctaatttatttattgtttatggg-cttgatatataggggatgaagacgtctttgctgattgtggttggaa 427  Q
    |||||||||||||||||||||| |||||||||||| | ||||||||||||||| | | |||||||||||||||||| ||  |||||||||||||||||||    
21990540 ttactattgcattttgttaactcttttctcctaatctgtttattgtttatgggcccttatatataggggatgaagatgtagttgctgattgtggttggaa 21990441  T
428 ttgttgaga 436  Q
    ||| |||||    
21990440 ttgatgaga 21990432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 519
Target Start/End: Original strand, 28658640 - 28658687
Alignment:
472 atttaagtgtttacactgacattactttgtacttcttaataacttatt 519  Q
    ||||||||| |||||||||||||| ||||||||||||| || ||||||    
28658640 atttaagtggttacactgacattattttgtacttcttagtagcttatt 28658687  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 5523931 - 5523996
Alignment:
237 atgttctttacttttcaatatggtttaatctctagtaaggtttgagcatcaagtgtagaaagagtt 302  Q
    ||||| |||||| ||||||||||||||||||  | ||||||||||||||||||| |||||||||||    
5523931 atgttttttactcttcaatatggtttaatcttcaataaggtttgagcatcaagtatagaaagagtt 5523996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 519
Target Start/End: Original strand, 4537 - 4591
Alignment:
465 tttaagtatttaagtgtttacactgacattactttgtacttcttaataacttatt 519  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| || ||||||    
4537 tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt 4591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 519
Target Start/End: Original strand, 3734086 - 3734140
Alignment:
465 tttaagtatttaagtgtttacactgacattactttgtacttcttaataacttatt 519  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| || ||||||    
3734086 tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt 3734140  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 519
Target Start/End: Complemental strand, 2752009 - 2751955
Alignment:
465 tttaagtatttaagtgtttacactgacattactttgtacttcttaataacttatt 519  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| || ||||||    
2752009 tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt 2751955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 519
Target Start/End: Original strand, 15359553 - 15359607
Alignment:
465 tttaagtatttaagtgtttacactgacattactttgtacttcttaataacttatt 519  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| || ||||||    
15359553 tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt 15359607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 509
Target Start/End: Complemental strand, 288857 - 288813
Alignment:
465 tttaagtatttaagtgtttacactgacattactttgtacttctta 509  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||    
288857 tttaaggatttaagcgtttacactgacattattttgtacttctta 288813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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