View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12395_high_2 (Length: 585)

Name: NF12395_high_2
Description: NF12395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12395_high_2
NF12395_high_2
[»] chr8 (5 HSPs)
chr8 (165-566)||(3447714-3448120)
chr8 (12-95)||(3447601-3447683)
chr8 (167-265)||(30467176-30467274)
chr8 (170-241)||(38828941-38829012)
chr8 (167-265)||(7243828-7243926)
[»] chr1 (8 HSPs)
chr1 (165-266)||(40205129-40205230)
chr1 (170-274)||(23930343-23930448)
chr1 (170-265)||(40032278-40032373)
chr1 (170-265)||(527943-528039)
chr1 (172-265)||(18341614-18341707)
chr1 (171-226)||(47148320-47148375)
chr1 (187-265)||(50154081-50154159)
chr1 (167-221)||(34644001-34644055)
[»] chr5 (6 HSPs)
chr5 (165-266)||(7719691-7719792)
chr5 (167-213)||(15405374-15405420)
chr5 (192-258)||(15405420-15405486)
chr5 (170-251)||(28234672-28234753)
chr5 (167-215)||(14913601-14913649)
chr5 (183-222)||(35607324-35607364)
[»] chr3 (4 HSPs)
chr3 (170-266)||(54776893-54776989)
chr3 (170-265)||(47804077-47804171)
chr3 (165-206)||(54433091-54433132)
chr3 (524-566)||(16775297-16775339)
[»] chr6 (2 HSPs)
chr6 (170-265)||(5330615-5330710)
chr6 (170-215)||(32429196-32429241)
[»] chr7 (3 HSPs)
chr7 (167-274)||(40167243-40167352)
chr7 (170-266)||(37526421-37526517)
chr7 (167-272)||(45235047-45235151)
[»] chr2 (3 HSPs)
chr2 (167-224)||(19905541-19905598)
chr2 (169-251)||(4809549-4809632)
chr2 (167-221)||(31938114-31938168)
[»] chr4 (3 HSPs)
chr4 (180-266)||(23850030-23850116)
chr4 (167-224)||(5472605-5472662)
chr4 (167-222)||(54166682-54166735)


Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-166; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 165 - 566
Target Start/End: Original strand, 3447714 - 3448120
Alignment:
Q  165 attgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaa 264  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||    
T  3447714 attgaaatctcaaccattaaatatgagagagaaaatgagtgttaaattataaagaaaagtggtcaatggattttaatggtggagattaaaaatggagaaa 3447813  T
Q  265 acctaagaaattttttgcgttggtaaatactctcttggttaattattttcactctgttttaaaagaaagaagtgcttcttcnnnnnnnnnnnnnn----- 359  Q
    || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||                       
T  3447814 acttaagaaattttttgtgttggtaaatactcccttggttaattattttcactctgttttaaaagaaagaagtgcttcttctttcttttctttttttttt 3447913  T
Q  360 acacaaagtaatgctaattgaagtgtcacagttaattcgtcgaaatgattagcaacatttgtccacttctctgactctgaagatgttgaagcagttggtc 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  3447914 acacaaagtaatgctaattgaagtgtcacagttaattcgtcgaaatgactagtaacatttgtccacttctctgactctgaagatgttgaagcggttggtc 3448013  T
Q  460 gtcccaattgatcaattatattgtcttctgtaagaattattgatcattgttagtattctgcaaggaactttctacgggcatggtacgaaccaatacctag 559  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3448014 gtcccaattgatcaattatattgtcttctgtaagagttattgatcattgttagtattctgcaaggaactttctacgggcatggtacgaaccaatacctag 3448113  T
Q  560 cggccat 566  Q
    |||||||    
T  3448114 cggccat 3448120  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 3447601 - 3447683
Alignment:
Q  12 aacctgtgtcttactattggttggtcaactagggcagtaatatctacaagtatttgatgcaaatttagtttaggaattaaataa 95  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3447601 aacctgtgtcttactattg-ttggtcaactagagcagtaatatctacaagtatttgatgcaaatttagtttaggaattaaataa 3447683  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 30467274 - 30467176
Alignment:
Q  167 tgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaaa 265  Q
    |||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||||  || ||| ||||  || ||||| | |||||||||||    
T  30467274 tgaaatctcaaccatcaaatatgagagagaaagtgaaaattaaattataaagaaaagtggttgttgtattataatgatgaagattgaaaatggagaaaa 30467176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 38829012 - 38828941
Alignment:
Q  170 aatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaat 241  Q
    |||||||||||| |||||||||||||||||| ||  ||||||||||| ||||| |||||| || ||||||||    
T  38829012 aatctcaaccattaaatatgagagagaaaataagaattaaattataatgaaaattggttattgtattttaat 38828941  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 7243926 - 7243828
Alignment:
Q  167 tgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaaa 265  Q
    ||||||||||||||||||  |||||| ||||| |||   ||||||||||| ||| ||| |||  || |||||||||||| ||||| | |||||||||||    
T  7243926 tgaaatctcaaccatcaatcatgagaaagaaagtgaaaattaaattataacgaatagtagttgttgtattttaatagtgaagattgaaaatggagaaaa 7243828  T

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Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 40205230 - 40205129
Alignment:
Q  165 attgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaa 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||| ||||||||||    
T  40205230 attgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtgggttttaatgatggagattaaaaatggagaaa 40205131  T
Q  265 ac 266  Q
    ||    
T  40205130 ac 40205129  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 23930343 - 23930448
Alignment:
Q  170 aatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaa-gtggttagtggattttaatagtggagattaataatggagaaaacct 268  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| |||||  |||||  || |||||||| ||||||||| | |||||||||||| |    
T  23930343 aatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaatttggttgttgtattttaatggtggagattgaaaatggagaaaactt 23930442  T
Q  269 aagaaa 274  Q
    ||||||    
T  23930443 aagaaa 23930448  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 40032373 - 40032278
Alignment:
Q  170 aatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaaa 265  Q
    |||||||||||||||  |||||||||||| ||||  ||||||||||| |||||||||||  || |||||||| ||| ||||| | |||||||||||    
T  40032373 aatctcaaccatcaatcatgagagagaaagtgagaattaaattataatgaaaagtggttgttgtattttaatggtgtagattgaaaatggagaaaa 40032278  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 265
Target Start/End: Original strand, 527943 - 528039
Alignment:
Q  170 aatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtgga-ttttaatagtggagattaataatggagaaaa 265  Q
    |||||||||||||||  |||||||||||| ||||  ||||||||||| |||||||||||  || | ||||||||||||| ||| | |||||||||||    
T  527943 aatctcaaccatcaatcatgagagagaaagtgagaattaaattataatgaaaagtggttgttgtatttttaatagtggaaattgaaaatggagaaaa 528039  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 18341614 - 18341707
Alignment:
Q  172 tctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaaa 265  Q
    |||||| ||||||| |||||||||||||||||  |||||  |||||||||| | |||  || ||||||||  |||||||||| |||||||||||    
T  18341614 tctcaatcatcaaacatgagagagaaaatgagaattaaaaaataaagaaaaatagttgttgtattttaatgttggagattaaaaatggagaaaa 18341707  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 47148320 - 47148375
Alignment:
Q  171 atctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtgg 226  Q
    ||||||||||||||| |||||||| |||||||   |||||||||||||||||||||    
T  47148320 atctcaaccatcaaacatgagagataaaatgaaaattaaattataaagaaaagtgg 47148375  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 50154159 - 50154081
Alignment:
Q  187 atgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaaa 265  Q
    |||| ||||||| |||| ||||||||||||||||||||||||  ||  |||||||  |||||||||| ||| |||||||    
T  50154159 atgatagagaaagtgagagttaaattataaagaaaagtggttgatgagttttaatgatggagattaaaaattgagaaaa 50154081  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 34644001 - 34644055
Alignment:
Q  167 tgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaa 221  Q
    |||||||||||| |||||| |||| ||||||||| ||  ||||||||||||||||    
T  34644001 tgaaatctcaactatcaaacatgaaagagaaaataagaattaaattataaagaaa 34644055  T

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Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 7719792 - 7719691
Alignment:
Q  165 attgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaa 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| ||||| ||||||||||    
T  7719792 attgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtgatttttaatggtggatattaaaaatggagaaa 7719693  T
Q  265 ac 266  Q
    ||    
T  7719692 ac 7719691  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 15405374 - 15405420
Alignment:
Q  167 tgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaatta 213  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  15405374 tgaaatctcaaccatcaaatatgagagagaaaatgagtattaaatta 15405420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 15405420 - 15405486
Alignment:
Q  192 agagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatg 258  Q
    ||||||||||||| |||||||| || |||||||||||||||| ||||||| ||||||||||| ||||    
T  15405420 agagaaaatgagtattaaattacaatgaaaagtggttagtgggttttaatggtggagattaaaaatg 15405486  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 28234672 - 28234753
Alignment:
Q  170 aatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagatt 251  Q
    |||||||||||||||  |||||||||||||||||  ||||||||||| |||||||| ||  || |||||||  |||||||||    
T  28234672 aatctcaaccatcaatcatgagagagaaaatgagaattaaattataatgaaaagtgattgttgtattttaaccgtggagatt 28234753  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 14913601 - 14913649
Alignment:
Q  167 tgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattata 215  Q
    ||||||||||||||||||| |||||||||||| ||||  ||||||||||    
T  14913601 tgaaatctcaaccatcaaacatgagagagaaagtgagaattaaattata 14913649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 35607364 - 35607324
Alignment:
Q  183 aaatatgagagagaaaatgag-tgttaaattataaagaaaa 222  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  35607364 aaatatgagagagaaaatgagatattaaattataaagaaaa 35607324  T

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Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 54776989 - 54776893
Alignment:
Q  170 aatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaaac 266  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||| ||||| | || |||||||| ||||||||||||    
T  54776989 aatctcaaccatcaaatatgaaagagaaaatgagaattaaattataaagaaaagtggttagtgggttttagtggtagagattaaaaatggagaaaac 54776893  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 47804171 - 47804077
Alignment:
Q  170 aatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaaa 265  Q
    ||||||||||||||||||||||| | || ||||| |||||||| ||||||||||||||| |||  ||| ||| ||| | ||| | |||||||||||    
T  47804171 aatctcaaccatcaaatatgagaaacaagatgagagttaaatt-taaagaaaagtggttggtgtgtttaaatggtgaatattgaaaatggagaaaa 47804077  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 54433091 - 54433132
Alignment:
Q  165 attgaaatctcaaccatcaaatatgagagagaaaatgagtgt 206  Q
    |||||||||||||||||||||||||| ||||||||| |||||    
T  54433091 attgaaatctcaaccatcaaatatgaaagagaaaattagtgt 54433132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 524 - 566
Target Start/End: Original strand, 16775297 - 16775339
Alignment:
Q  524 gaactttctacgggcatggtacgaaccaatacctagcggccat 566  Q
    ||||||||||| |||||||||||||||| | ||||||||||||    
T  16775297 gaactttctacaggcatggtacgaaccagtccctagcggccat 16775339  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 5330710 - 5330615
Alignment:
Q  170 aatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaaa 265  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||| ||||| | || |||||||| |||||||||||    
T  5330710 aatctcaaccatcaaatatgaaagagaaaatgagaattaaattataaagaaaagtggttagtgggttttagtggtagagattaaaaatggagaaaa 5330615  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 32429196 - 32429241
Alignment:
Q  170 aatctcaaccatcaaatatgagagagaaaatgagtgttaaattata 215  Q
    ||||||||||||||| ||||||||||||| ||||  ||||||||||    
T  32429196 aatctcaaccatcaattatgagagagaaagtgagaattaaattata 32429241  T

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Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 40167352 - 40167243
Alignment:
Q  167 tgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaat--tataaagaaaagtggttagtggattttaatagtggagattaataatggagaaa 264  Q
    |||||||| |||||| ||||||||||||||||||||| |||||||  |||||| ||||||||||| ||| |||||||  |||||||||| ||||||||||    
T  40167352 tgaaatcttaaccattaaatatgagagagaaaatgagagttaaattgtataaaaaaaagtggttaatggcttttaatgatggagattaaaaatggagaaa 40167253  T
Q  265 acctaagaaa 274  Q
    | || |||||    
T  40167252 atctgagaaa 40167243  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 37526517 - 37526421
Alignment:
Q  170 aatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaaac 266  Q
    |||||||||||||||| || ||||||||||||||  |||||||||||  ||||||||||  || |||||||| ||||||||| | ||||||||||||    
T  37526517 aatctcaaccatcaaacataagagagaaaatgagaattaaattataataaaaagtggttgttgtattttaatggtggagattgaaaatggagaaaac 37526421  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 45235047 - 45235151
Alignment:
Q  167 tgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtggattttaatagtggagattaataatggagaaaac 266  Q
    ||||||||||||||||||| || ||||||||||||||  ||||||| |||  |||||| |||  || |||| |||  |||||||| | ||||||||||||    
T  45235047 tgaaatctcaaccatcaaacataagagagaaaatgagaattaaattttaataaaaagt-gttgttgtatttcaatgatggagattgaaaatggagaaaac 45235145  T
Q  267 ctaaga 272  Q
     |||||    
T  45235146 ttaaga 45235151  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 19905541 - 19905598
Alignment:
Q  167 tgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagt 224  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||    
T  19905541 tgaaatctcaaccatcaaatatgagagagaaaatgagaattaaattataatgaaaagt 19905598  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 4809549 - 4809632
Alignment:
Q  169 aaatctcaaccatcaaatatgagagagaaaa-tgagtgttaaattataaagaaaagtggttagtggattttaatagtggagatt 251  Q
    |||| |||||||||||| || ||||| |||| | || |||||||||||||||||||| ||||||| |||||||| || ||||||    
T  4809549 aaatttcaaccatcaaacattagagaaaaaaataagagttaaattataaagaaaagtagttagtgaattttaatggtagagatt 4809632  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 31938168 - 31938114
Alignment:
Q  167 tgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaa 221  Q
    ||||||||||||||||||  |||||||||||| ||||  ||||||||||| ||||    
T  31938168 tgaaatctcaaccatcaatcatgagagagaaagtgagaattaaattataatgaaa 31938114  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 23850116 - 23850030
Alignment:
Q  180 atcaaatatgagagagaaaatgagtgttaaattataaagaaaagtggttagtgg-attttaatagtggagattaataatggagaaaac 266  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||| || |||| |||||||| || |||||| | ||||||||||||    
T  23850116 atcaaatatgagagagaaagtgagagttagattataaagaaaagtgatt-gtggtattttaatggtagagattgaaaatggagaaaac 23850030  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 5472605 - 5472662
Alignment:
Q  167 tgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaagt 224  Q
    ||||||||||| ||||||| |||||||||||| ||||  ||||||||||| |||||||    
T  5472605 tgaaatctcaatcatcaaacatgagagagaaagtgagaattaaattataatgaaaagt 5472662  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 54166682 - 54166735
Alignment:
Q  167 tgaaatctcaaccatcaaatatgagagagaaaatgagtgttaaattataaagaaaa 222  Q
    ||||||||||||||||||| |||||||||  ||| || ||||||||||||| ||||    
T  54166682 tgaaatctcaaccatcaaacatgagagag--aataagagttaaattataaaaaaaa 54166735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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