View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12395_low_3 (Length: 567)
Name: NF12395_low_3
Description: NF12395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12395_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 209 - 550
Target Start/End: Complemental strand, 6486616 - 6486275
Alignment:
| Q |
209 |
gttcgatgacccttagctcactagacgagctatttggattctttgcatgaacatggtgcagttcgctgcagaaccatttgatgtaaactgaatttgagtt |
308 |
Q |
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| T |
6486616 |
gttcgatgacccttagctcactagacgagctatttggattctttgcatgtacatggtgcagttcgctgcagaaccgtttgatgtaaactgaatttgagtt |
6486517 |
T |
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| Q |
309 |
cacaaacggctctgcaatgtgctgcaccatacagagaatccaaatctaaataaaatgttattgtatcctaaaattaatcgttgctaacttataattaatt |
408 |
Q |
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| T |
6486516 |
cacaaacggctctgcaatgtgctgcaccatacagagaatccaaatctaaataaaatgttattgtatcctaaaattaatcgttgctaacttataattaatt |
6486417 |
T |
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| Q |
409 |
tgaaatttggaattcagattaagtggtgagggctcaccaatgatgatgtcaccatggaatcaaacaacaaattcaccattctcaaagccacaatggtcac |
508 |
Q |
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| T |
6486416 |
tgaaatttggaattcagattaagtggtgagggctcaccaatgatgatgtcaccatggaatcaaacaacaaattcaccattctcaaagccacaatggtcac |
6486317 |
T |
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| Q |
509 |
aacatgaagacacacctccacagaattcactaatcggttcac |
550 |
Q |
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| T |
6486316 |
aacatgaagacacgcctccacagaattcactaattggttcac |
6486275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 6486822 - 6486678
Alignment:
| Q |
4 |
aataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcctatactgacgatgactatgccatgcgtagcagcagcgccg |
103 |
Q |
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| T |
6486822 |
aataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcctatactgacgatgactatgccatgcgtagcagcagcgccg |
6486723 |
T |
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| Q |
104 |
cctcccccatgagcccttactactacgaccctggaaggtctctcc |
148 |
Q |
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| T |
6486722 |
cctcccccatgagcccttactactacgaccctggaaggtctctcc |
6486678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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