View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12396_high_14 (Length: 242)
Name: NF12396_high_14
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12396_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 3089105 - 3089301
Alignment:
| Q |
25 |
cttgttttgaactaatcatgtagttgggctaaagagagcatacaaatagcgtgcaaatggggttatgaaggagttaaatctggaatgactctatcaggta |
124 |
Q |
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| T |
3089105 |
cttgttttgaactaatcatgtagttgggctaaagagagcatacaaatagcgtgcaaatggggttatgaaggagttaaatctggaatgactctatcaggta |
3089204 |
T |
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| Q |
125 |
actcaagtcacaaactataaattcaaccacttactgataggcgtttctttaaagcaaggtttt-aaaacctagtagaagatcaaaccgacgagacat |
220 |
Q |
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| T |
3089205 |
actcaagtcacaaactataaattcaaccacttactgataggcgtttctttaaagcaaggttttaaaaacctggtagaagatcgaaccgacgagacat |
3089301 |
T |
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