View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12396_high_15 (Length: 240)
Name: NF12396_high_15
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12396_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 30661217 - 30661009
Alignment:
| Q |
20 |
ccaattatttgactctttgaggttgaaaggtaataccaccagtttctgcttttctggtttatatgccaaaagctaagagccaaaaaagcaacatccaatt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30661217 |
ccaattatttgactctttgaggttgaaaggtaataccaccagtttctgcttttccggtttatatgccaaaagctaagagccaaaaaagcaacatccaatt |
30661118 |
T |
|
| Q |
120 |
tatacacaactacaatttcatgaacaattaagaaatcgcagcttacataccaaaatgaatcataatagatttcagcagcaattatcgtaaaacatactcg |
219 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30661117 |
tatacacaactacaatttcatgaacaattaagaaatcgcagcttatataccaaaatgaatcataatggatttcagcagcaattatcgtaaaacatactcg |
30661018 |
T |
|
| Q |
220 |
cacaggttc |
228 |
Q |
| |
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||| ||||| |
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|
| T |
30661017 |
caccggttc |
30661009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 37949895 - 37950103
Alignment:
| Q |
20 |
ccaattatttgactctttgaggttgaaaggtaataccaccagtttctgcttttctggtttatatgccaaaagctaagagccaaaaaagcaacatccaatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37949895 |
ccaattatttgactctttgaggttgaaaggtaataccaccagtttctgcttttccggtttatatgccaaaagctaagagccaaaaaagcaacatccaatt |
37949994 |
T |
|
| Q |
120 |
tatacacaactacaatttcatgaacaattaagaaatcgcagcttacataccaaaatgaatcataatagatttcagcagcaattatcgtaaaacatactcg |
219 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37949995 |
tatacacaactacaatttcatgaacaattaagaaatcgcagcttatataccaaaatgaatcataatggatttcagcagcaattatcgtaaaacatactcg |
37950094 |
T |
|
| Q |
220 |
cacaggttc |
228 |
Q |
| |
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||| ||||| |
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| T |
37950095 |
caccggttc |
37950103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 49681436 - 49681228
Alignment:
| Q |
20 |
ccaattatttgactctttgaggttgaaaggtaataccaccagtttctgcttttctggtttatatgccaaaagctaagagccaaaaaagcaacatccaatt |
119 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49681436 |
ccaattatttgaatctttgaagttgaaaggtaataccaccagtttctgcttttctggtttatatgccaaaagctaagagccaaaaaagcaacatccaatt |
49681337 |
T |
|
| Q |
120 |
tatacacaactacaatttcatgaacaattaagaaatcgcagcttacataccaaaatgaatcataatagatttcagcagcaattatcgtaaaacatactcg |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49681336 |
tatacacagctacaatttcatgaacaattaagaaatcgcagcttacataccaaaatgaatcataatagatttcagcagcaattatcgtaaaacatactcg |
49681237 |
T |
|
| Q |
220 |
cacaggttc |
228 |
Q |
| |
|
||| ||||| |
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|
| T |
49681236 |
caccggttc |
49681228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 19323601 - 19323402
Alignment:
| Q |
21 |
caattatttgactctttgaggttgaaaggtaataccaccagtttctgcttttctggtttatatgccaaaagctaagagccaaaaaagcaacatccaattt |
120 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | |||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19323601 |
caattatttgactctttgag-ttgaaaggtaataccactaatttccgcctttccggtttatatgccaaaagctaagagccaaaaaagcaacatccaattt |
19323503 |
T |
|
| Q |
121 |
atacacaactacaatttcatgaacaattaagaaatcgcagcttacataccaaaatgaatcataatagatttcagcagcaattatcgtaaaacatactcgc |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
19323502 |
atacacaactacaatttcatgaacaattaagaaatcacaacttatataccaaaatgaatcataatagatttcagcaacaattatcataaaacatactcgc |
19323403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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