View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12396_high_4 (Length: 451)
Name: NF12396_high_4
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12396_high_4 |
 | |
|
| [»] scaffold0024 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 2964356 - 2964776
Alignment:
| Q |
18 |
ccttggttagatgttggtttaacaatagatttgttgttacttgaaaaccagcttccttttttcgttgttgaataaatttacagtctttcattcagttcta |
117 |
Q |
| |
|
||||||||| |||||||| ||| | |||||| ||||||||||||| |||||||| | ||||||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
2964356 |
ccttggttatatgttggtataagatcagatttaatgttacttgaaaatcagcttccctatttcgttattgaaaaaatttacagtctttcattgagttcta |
2964455 |
T |
|
| Q |
118 |
caaatgctagtgttcct---------------tctcttcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgggttttgataataa |
202 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||| |||||||||| | || ||||||||||||||||| ||||||||| |
|
|
| T |
2964456 |
caaatgctagtgttcctaacactaacatcccttcttttcttaaactcactactgattattttgattattacaataaatcaaaattggattttgataaggg |
2964555 |
T |
|
| Q |
203 |
agatattagtatcatgcacttcactgatctgattaggatatttcatttgaaacatcctattgaaagtcgaccgagtagagacgacatcgacgaacggata |
302 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| ||||| || ||| |||| |
|
|
| T |
2964556 |
tgatattagtataaggcacttcactgatctgattaggatatttcatttgcaacatcctattgaaaatcggccgagtagagacaacatcaacaaacagata |
2964655 |
T |
|
| Q |
303 |
atacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggag |
402 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2964656 |
atacatctacctagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagtaagtgtttacttgacttgaggttttcgggaggag |
2964755 |
T |
|
| Q |
403 |
ttcttgaaattcctcaattaa |
423 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2964756 |
ttcttgaaattcctcaattaa |
2964776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 44 - 424
Target Start/End: Original strand, 2973895 - 2974275
Alignment:
| Q |
44 |
agatttgttgttacttgaaaaccagcttccttttttcgttgttgaataaatttacagtctttcattcagttctacaaatgctagtgttcc-ttctcttct |
142 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||| ||||| ||||||||||| ||||||| | | | | || ||| || ||| |||| |||| |
|
|
| T |
2973895 |
agatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtatttcattgactgttcctaacacta-tgatccattcttttct |
2973993 |
T |
|
| Q |
143 |
tgaactcacttttgattattttcaaggtttcaataaatcaaaattgggttttgataataaagatattagtatcatgcacttcactgatctgattaggata |
242 |
Q |
| |
|
| |||||||| ||| ||| |||||| ||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
2973994 |
taaactcactattgcttactttcaatgtttcaataaaccaaaattgggttttgataacaatgatattagtataatgcacttcaatgatctgattaggata |
2974093 |
T |
|
| Q |
243 |
tttcatttgaaacatcctattgaaagtcgaccgagtagagacgacatcgacgaacggataatacatataccgactgcaactgagttgttagaagctggag |
342 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| | ||||| |||| ||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
2974094 |
tttcatttgaaacatcctattgaaagtaggccgagtagagagcagatcgatgaacaaataatacatctaccgagtgcaactgagttgttagaagctggag |
2974193 |
T |
|
| Q |
343 |
ttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaac |
424 |
Q |
| |
|
|||||||||||||||||||| ||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2974194 |
ttaggtttaaagtgaacactaaaagtgaatgtttacatgacttgaggttttcgggaggagttcttgaaattcctcaattaac |
2974275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 2659222 - 2658787
Alignment:
| Q |
18 |
ccttggttagatgttggtttaacaatagatttgttgttacttgaaaaccagcttccttttttcgttgttgaataaatttacagtctttcattcagttcta |
117 |
Q |
| |
|
||||||||||||| |||| || || ||||||| |||||||||||||| |||||||| ||||||||| ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
2659222 |
ccttggttagatgatggtatagcattagatttattgttacttgaaaatcagcttccctttttcgttattgaagaaatttacaaactttcatcgagttcta |
2659123 |
T |
|
| Q |
118 |
caaatgctagtgttcct----------tctct-----tcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgggttttgataataa |
202 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||| || | |||||| | || |||||||||||| ||| |||||||||| |
|
|
| T |
2659122 |
caaatgctagtgttcctaagactacgatccctggttttcttgaactcactattaaatatttttattcttccaataaatcaaacttgttttttgataatgg |
2659023 |
T |
|
| Q |
203 |
agatattagtatcatgcacttcactgatctgattaggatatttcatttgaaacatcctattgaaagtcgaccgagtagagacgacatcgacgaacggata |
302 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||| | |||||||||||| |
|
|
| T |
2659022 |
tgatattagtataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaaattcgaccgagtaataacgcgaccgacgaacggatg |
2658923 |
T |
|
| Q |
303 |
atacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttt------tcgg |
396 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| || | |
|
|
| T |
2658922 |
atacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagtgtttacttgacttgaggttttcaaaatcag |
2658823 |
T |
|
| Q |
397 |
gaggagttcttgaaattcctcaattaacggttgacg |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
2658822 |
gaggagttcttgaaattcctcaattaacggttgacg |
2658787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 52 - 423
Target Start/End: Original strand, 2982762 - 2983130
Alignment:
| Q |
52 |
tgttacttgaaaaccagcttccttttttcgttgttgaataaatttacagtctttcattcagttctacaaatgctagtgttccttctcttcttgaactcac |
151 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| ||||| |||||||||||| ||||| |||| | | | |||||||||||| ||||||||||||| |
|
|
| T |
2982762 |
tgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtcgttcat---gttccatatacaaaagtgttccttcttttcttgaactcac |
2982858 |
T |
|
| Q |
152 |
ttttgattattttcaaggtttcaataaatcaaaattgggttttgataataaagatattagtatcatgcacttcactgatctgattaggatatttcatttg |
251 |
Q |
| |
|
| | |||| ||| || || ||||||||||||||| |||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
2982859 |
tatccattactttaaaaaattgaataaatcaaaattgtcttttgataatggtgatattagtataaggcacttcactgatctgattaggatatttcatttg |
2982958 |
T |
|
| Q |
252 |
aaacatcctattgaaagtcgaccgagtagagacgacatcgacgaacggataatacatataccgactgcaactgagttgttagaagctggagttaggttta |
351 |
Q |
| |
|
||||||||||||||||||| |||||||||| | | ||||| |||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
2982959 |
caacatcctattgaaagtcggccgagtagagtcaagatcgaaaaacggataatacatatacagactgcaactcagttggtagaagctggagttaggtttc |
2983058 |
T |
|
| Q |
352 |
aagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaa |
423 |
Q |
| |
|
||||||| ||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2983059 |
aagtgaaaactaaaagtaagtgtttatatgacttgaggttttcgggaggagttcttgaaattcctcaattaa |
2983130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 204 - 430
Target Start/End: Original strand, 2937508 - 2937734
Alignment:
| Q |
204 |
gatattagtatcatgcacttcactgatctgattaggatatttcatttgaaacatcctattgaaagtcgaccgagtagagacgacatcgacgaacggataa |
303 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |||||||||| ||||| |
|
|
| T |
2937508 |
gatattagtataagtcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtcggccgagtagagaagcgatcgacgaacagataa |
2937607 |
T |
|
| Q |
304 |
tacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagt |
403 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
2937608 |
tacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagtaattgtttacttgacttgagattttcaggaggagt |
2937707 |
T |
|
| Q |
404 |
tcttgaaattcctcaattaacggttga |
430 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
2937708 |
tcttgaaattcctcaattaacagttga |
2937734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 53 - 423
Target Start/End: Original strand, 2951833 - 2952200
Alignment:
| Q |
53 |
gttacttgaaaaccagcttccttttttcgttgttgaataaatttacagtctttcattcagt--tctacaaatg-ctagtgttcc-ttctcttcttgaact |
148 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||||| | | | | | || ||| || ||| |||| ||||| |||| |
|
|
| T |
2951833 |
gttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattgactaatgttcctatcacta-tgatccattcttttcttaaact |
2951931 |
T |
|
| Q |
149 |
cacttttgattattttcaaggtttcaataaatcaaaattgggttttgataataaagatattagtatcatgcacttcactgatctgattaggatatttcat |
248 |
Q |
| |
|
|||| || |||||||| || ||||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
2951932 |
cactattcattattttggttattacaataaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggatatttcat |
2952031 |
T |
|
| Q |
249 |
ttgaaacatcctattgaaagtcgaccgagtagagacgacatcgacgaacggataatacatataccgactgcaactgagttgttagaagctggagttaggt |
348 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||| | | ||| |||||| |||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2952032 |
ttgcaacatcctattgaaagtcggccgagtagag------ttgtagaatggataaaacatctaccgagtgcaactgagttgttagaagctggagttaggt |
2952125 |
T |
|
| Q |
349 |
ttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaa |
423 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2952126 |
ttaaagtgaacactgaaagtaagtgtttacttgacttgaggttttcggaaggagttcttgaaattcctcaattaa |
2952200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 173 - 432
Target Start/End: Original strand, 2934616 - 2934875
Alignment:
| Q |
173 |
caataaatcaaaattgggttttgataataaagatattagtatcatgcacttcactgatctgattaggatatttcatttgaaacatcctattgaaagtcga |
272 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2934616 |
caataaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtcgg |
2934715 |
T |
|
| Q |
273 |
ccgagtagagacgacatcgacgaacggataatacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagt |
372 |
Q |
| |
|
|||||||||||| ||||||||| || ||| | |||| ||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
2934716 |
ccgagtagagacatgttcgacgaacagaagataagtctacccggtgcaactgaattgttagaagctggagttaggtttaaagtgaatactaaaagtaagt |
2934815 |
T |
|
| Q |
373 |
gtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaacggttgacg |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2934816 |
gtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaacggttgacg |
2934875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 3003997 - 3003596
Alignment:
| Q |
18 |
ccttggttagatgttggtttaacaatagatttgttgttacttgaaaaccagcttccttttttcgttgttgaataaatttacagtctttcattca-----g |
112 |
Q |
| |
|
|||||||||||| |||| ||| || ||||| | |||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||||| | | |
|
|
| T |
3003997 |
ccttggttagataatggtataagaaacgatttatggttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattgactaatg |
3003898 |
T |
|
| Q |
113 |
ttc-tacaaatgctagtgttcc-ttctcttcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgggttttgataataaagatatta |
210 |
Q |
| |
|
||| ||| | ||| || ||| |||| ||||| |||||||| || |||||||| || ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
3003897 |
ttcctacca---cta-tgatccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattggattttgataagggtgatatta |
3003802 |
T |
|
| Q |
211 |
gtatcatgcacttcactgatctgattaggatatttcatttgaaacatcctattgaaagtcgaccgagtagagacgacatcgacgaacggataatacatat |
310 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||| |||| | |||| |
|
|
| T |
3003801 |
gtataagtcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtcggccgagtagag------tcagagaatggatgaaacatcc |
3003708 |
T |
|
| Q |
311 |
accgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaa |
410 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003707 |
accgagtgcaactgagttgttagaagctggagttagatttaaagtgaacactgaaagtaagtgtttacttgacttgaggttttcgggaggagttcttgaa |
3003608 |
T |
|
| Q |
411 |
attcctcaatta |
422 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3003607 |
attcctcaatta |
3003596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 53 - 423
Target Start/End: Original strand, 2927051 - 2927427
Alignment:
| Q |
53 |
gttacttgaaaaccagcttccttttttcgttgttgaataaatttacagtctttcattca-----gttc-tacaaatgctagtgttcc-ttctcttcttga |
145 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||||| | |||| ||| | ||| || ||| |||| ||||| | |
|
|
| T |
2927051 |
gttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcattgactaatgttcctacca---cta-tgatccattcttttcttaa |
2927146 |
T |
|
| Q |
146 |
actcacttttgattattttcaaggtttcaataaatcaaaattgggttttgataataaagatattagtatcatgcacttcactgatctgattaggatattt |
245 |
Q |
| |
|
||||||| || |||||||| || |||||||||||||||| ||||||||| ||||||| ||| | ||||||||||||||||||| |||||||| |
|
|
| T |
2927147 |
actcactattcattattttggttattacaataaatcaaaattgaattttgataagggtgatattattataaggcacttcactgatctgattcggatattt |
2927246 |
T |
|
| Q |
246 |
catttgaaacatcctattgaaagtcgaccgagtagagacgacatcgacgaacggataata---catataccgactgcaactgagttgttagaagctggag |
342 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||| || | | |||| ||| ||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
2927247 |
catttgcaacatcctattgaaagtcggccgagtagagaccgggtctgcctagggatgataaaacatctaccgagtgcaactgagttgttagaagctggag |
2927346 |
T |
|
| Q |
343 |
ttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaa |
423 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2927347 |
ttaggtttaaagtgaacactgaaagtaagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaa |
2927427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 2997617 - 2997191
Alignment:
| Q |
20 |
ttggttagatgttggtttaacaatagatttgttgttacttgaaaaccagcttccttttttcgttgttgaataaatttacagtctttcattcagttctaca |
119 |
Q |
| |
|
|||||| |||| |||| |||||| | |||| ||||||||||||| || ||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2997617 |
ttggttcgatgatggtataacaacaaatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcattcagttctaca |
2997518 |
T |
|
| Q |
120 |
aatgctagtgttcct---------------tctcttcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgggttttgataataaag |
204 |
Q |
| |
|
||||||||| |||| | | |||||||||||||| || ||| ||| ||||||||||||||| ||| ||||||| || | |
|
|
| T |
2997517 |
aatgctagtaatcctaacactatgatcccttgttttcttgaactcactattaattttttcttttctttcaataaatcaaacttgttttttgatgatggtg |
2997418 |
T |
|
| Q |
205 |
atattagtatcatgcacttcactgatctgattaggatatttcatttgaaacatcctattgaaagtcgaccgagtaga------------ga---cgacat |
289 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||| ||||| || | |||| |
|
|
| T |
2997417 |
atattagtataaggcacttcactgatctgattaggatatttcatttgcaacatccctttgaaaatcggccgggtagaattgatatcaaggatatcaacat |
2997318 |
T |
|
| Q |
290 |
cgacgaacggataatacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgagg |
389 |
Q |
| |
|
|| ||| |||| ||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
2997317 |
cggtgaatggatgttacatctaccaagtgcaactgagttgttagaagctggagttaagtttaaagtgaacactaaaagcaagtgtttacttgacttgagg |
2997218 |
T |
|
| Q |
390 |
ttttcgggaggagttcttgaaattcct |
416 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
2997217 |
ttttcgggagaagttcttgaaattcct |
2997191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 317 - 429
Target Start/End: Original strand, 2929470 - 2929582
Alignment:
| Q |
317 |
tgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
2929470 |
tgcaactgagttgttagaagctggagttaggtttaaagtgaacactaaaagtaagtgtttacttgacttaaggttttcaggaggagttcttgaaattcct |
2929569 |
T |
|
| Q |
417 |
caattaacggttg |
429 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
2929570 |
caattaacagttg |
2929582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 317 - 423
Target Start/End: Original strand, 2978408 - 2978513
Alignment:
| Q |
317 |
tgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcct |
416 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2978408 |
tgcaactgaattgttagaagctgga-ttaggtttaaagtgaacactaaaagtgagtgtttacttgatttgaggttttcgggaggagttcttgaaattcct |
2978506 |
T |
|
| Q |
417 |
caattaa |
423 |
Q |
| |
|
||||||| |
|
|
| T |
2978507 |
caattaa |
2978513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 2934489 - 2934546
Alignment:
| Q |
52 |
tgttacttgaaaaccagcttccttttttcgttgttgaataaatttacagtctttcatt |
109 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
2934489 |
tgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacagtctttcatt |
2934546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 2954555 - 2954608
Alignment:
| Q |
370 |
agtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaa |
423 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
2954555 |
agtgtttacttgacttgaggttttcacaacgagttcttggaattcctcaattaa |
2954608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 35449 - 35054
Alignment:
| Q |
18 |
ccttggttagatgttggtttaacaatagatttgttgttacttgaaaaccagcttccttttttcgttgttgaataaatttacagtctttcattcagttcta |
117 |
Q |
| |
|
||||||||||||| |||| ||| | |||||| |||||||||||||| |||||||| ||||||||| ||||| |||||||| ||||||| | ||||||| |
|
|
| T |
35449 |
ccttggttagatgctggtataagatcagatttattgttacttgaaaatcagcttccctttttcgttattgaaaaaatttacggtctttcgtggagttcta |
35350 |
T |
|
| Q |
118 |
caaatgctagtgttccttctcttcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgggttttgataataa-agatattagtatca |
216 |
Q |
| |
|
|||||| | ||| |||||||||||||| || ||||||||||| ||||||| |||||||||||| |||||||||||| || | | | || | |
|
|
| T |
35349 |
caaatggt---------tcttttcttgaactcactattaattattttcaatatttcaatcaatcaaaattggtttttgataataatagtcagt-gcataa |
35260 |
T |
|
| Q |
217 |
tgcacttcactgatctgattaggatatttcatttgaaacatcctattgaaagtcgaccgagtagagacgacatcgacgaacggataatacatataccgac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||| | |||||||||| |||||||||| |||||| |
|
|
| T |
35259 |
ggcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtcagccaagtagagacaagatcgacgaacagataatacatctaccgag |
35160 |
T |
|
| Q |
317 |
tgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcct |
416 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||| || ||| | ||||||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
35159 |
tgcaactcagttgttagaagctggagttaggtttcaagtgaagcctaaaagtgagtgtttacttgacttggggttttcggaaggagtgcttgaaattcct |
35060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 44795 - 44742
Alignment:
| Q |
370 |
agtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaa |
423 |
Q |
| |
|
||||||||||||| ||||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
44795 |
agtgtttacttgatttgaggttttcagaaagagttcttgaaattcctcaattaa |
44742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 45168 - 45123
Alignment:
| Q |
317 |
tgcaactgagttgttagaagctggagttaggtttaaagtgaacact |
362 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
45168 |
tgcaaatgagttgttagaagctggagttaggtttcaagtgaccact |
45123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 174 - 423
Target Start/End: Original strand, 49618436 - 49618691
Alignment:
| Q |
174 |
aataaatcaaaattgggttttgataataaagatattagtatcatgcacttcactgatctgattaggatatttcatttgaaacatcctattgaaagtcgac |
273 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| | | |
|
|
| T |
49618436 |
aataaatcaaaattggattttgatgacggtgatattagtataaggcacttcactgatctgattaggatatttcatttggaacatcctattgaaaggcagc |
49618535 |
T |
|
| Q |
274 |
cgagtagagac------gacatcgacgaacggataatacatataccgactgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaa |
367 |
Q |
| |
|
|| ||||| | ||| ||||| || || ||| || |||| | | |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49618536 |
cgggtagaatcatcatggacttcgacaaatctatgatatatctacccagcaccactgagttgttagaagctggagttaggtttaaagtgaacactaaaac |
49618635 |
T |
|
| Q |
368 |
taagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaa |
423 |
Q |
| |
|
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
49618636 |
tacatgtttacttgacttgaggttttccggacgagttcttgaaattcctcaattaa |
49618691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 132 - 421
Target Start/End: Original strand, 49613418 - 49613701
Alignment:
| Q |
132 |
ccttctcttcttgaactcacttttgattattttcaaggtttcaataaatcaaaattgggttttgataataaagatattagtatcatgcacttcactgatc |
231 |
Q |
| |
|
|||||| |||||||||| | ||||||||||||| | || |||| ||||||| ||||||||||||||| ||| ||||||| | |||||||||||||| |
|
|
| T |
49613418 |
ccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggcgattttagtataaggcacttcactgatc |
49613517 |
T |
|
| Q |
232 |
tgattaggatatttcatttgaaacatcctattgaaagtcgaccgagtagagacgacatcgacgaacggataatacatataccgactgcaactgagttgtt |
331 |
Q |
| |
|
|||||||||| || || || |||||||| | |||| || ||| |||| || || |||| || | |||| ||| || ||||||||||||||| |
|
|
| T |
49613518 |
tgattaggattttccacctgcaacatcctttgcaaagacggccgcttaga------attgatgaaccaatgaaacatctacagagtgcaactgagttgtt |
49613611 |
T |
|
| Q |
332 |
agaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaatt |
421 |
Q |
| |
|
||||||||| || |||||||||||||||||| ||| | ||||||||||||| ||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
49613612 |
agaagctggggtgaggtttaaagtgaacactaaaagtgagtgtttacttgatttgaggttttcaggacgggttcttgaaattcctcaatt |
49613701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 49613314 - 49613404
Alignment:
| Q |
43 |
tagatttgttgttacttgaaaaccagcttccttttttcgttgttgaataaatttacagtctttcattcagttctacaaatgctagtgttcc |
133 |
Q |
| |
|
|||||||||||||||||||||| || | || ||||| ||| || || ||||||||| ||||||||| | |||||| || ||||||||||| |
|
|
| T |
49613314 |
tagatttgttgttacttgaaaatcaattgccattttttgttattcaagaaatttacaatctttcatttacttctactaacgctagtgttcc |
49613404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 318 - 432
Target Start/End: Original strand, 3339187 - 3339301
Alignment:
| Q |
318 |
gcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaaataagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctc |
417 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3339187 |
gcaactgagttgttagaagcaggagttaggtttaaagtgaacactaaaagtgagtgtttacttggcttgaggttttcgggaggagttcttgaaattcctc |
3339286 |
T |
|
| Q |
418 |
aattaacggttgacg |
432 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
3339287 |
aattaacagttgacg |
3339301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 3339092 - 3339129
Alignment:
| Q |
229 |
atctgattaggatatttcatttgaaacatcctattgaa |
266 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3339092 |
atctgattaggatatttcatttgcaacatcctattgaa |
3339129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University