View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12396_high_7 (Length: 361)
Name: NF12396_high_7
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12396_high_7 |
 | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 56 - 347
Target Start/End: Original strand, 21006646 - 21006937
Alignment:
| Q |
56 |
aagaacatgcatctcaatagctgaagcatatgtaataacggtgtccccatcatgtaaaaccgacataattttagagagtgcgtgggttttcgcaactcta |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006646 |
aagaacatgcatctcaatagctgaagcatatgtaataacggtgtccccatcatgtaaaaccgacataattttagagagtgcgtgggttttcgcaactcta |
21006745 |
T |
|
| Q |
156 |
tgaaaataagccgtgttacagtcccaatgaataaaattctggtcccttgctttctccctccataacttatcctgattgttcaaattgttggtaaggacaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006746 |
tgaaaataagccgtgttacagtcccaatgaataaaattctggtcccttgctttctccctccataacttatcctgattgttcaaattgttggtaaggacaa |
21006845 |
T |
|
| Q |
256 |
gttaagcgtaagtcttgtgtataaagctcatccgaaaaaacagcgtattcaaaagatgttgaatcagattaacctcctccatagctaatgtt |
347 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006846 |
gttaagcgtaagtcttgagtataaagctcatccgaaaaaacagcgtattcaaaagatgttgaatcagattaacctcctccatagctaatgtt |
21006937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 21006543 - 21006571
Alignment:
| Q |
10 |
actcagcattatctgcatcagtcaccata |
38 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21006543 |
actcagcattatctgcatcagtcaccata |
21006571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 124968 - 124884
Alignment:
| Q |
147 |
gcaactctatgaaaataagccgtgttacagtcccaatgaataaaattctggtcccttgctttctccctccataacttatcctgat |
231 |
Q |
| |
|
|||| ||| |||||||| | ||||| || |||| || |||||||||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
124968 |
gcaagtctgtgaaaataggaagtgttgcaatccccattaataaaattctgatcccttgctttctccttccataaaatatcctgat |
124884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University